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Protein Overview: FBpp0309135, FBp...

General Information:
Name(s) found: FBpp0311350 [FlyBase]
FBpp0309135 [FlyBase]
RpS19a-PC / FBpp0074088 [FlyBase]
RpS19a-PB / FBpp0074087 [FlyBase]
RpS19a-PA / FBpp0074086 [FlyBase]
Description(s) found:
Found 63 descriptions.
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  • type=protein; loc=X:join(16532266..16532336,16532439..16532838); ID=FBpp0311350; name=RpS19a-PE; parent=FBgn0010412,FBtr0345129; dbxref=FlyBase:FBpp0311350,FlyBase_Annotation_IDs:CG4464-PE; MD5=3c25226b523535b66e41a44b0ea5ba1a; length=156; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=X:join(16532266..16532336,16532439..16532838); ID=FBpp0309135; name=RpS19a-PD; parent=FBgn0010412,FBtr0340149; dbxref=FlyBase:FBpp0309135,FlyBase_Annotation_IDs:CG4464-PD; MD5=3c25226b523535b66e41a44b0ea5ba1a; length=156; release=r5.56; species=Dmel; [FlyBase]
  • The gene Ribosomal protein S19a is referred to in FlyBase by the symbol Dmel\RpS19a (CG4464, FBgn0010412). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:16531912..16532953. It has the cytological map location 14F4. There is experimental evidence that it has the molecular function</span>: SUMO binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: translation. 2 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • The gene Ribosomal protein S19a is referred to in FlyBase by the symbol Dmel\RpS19a (CG4464, FBgn0010412). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:16531912..16532953. It has the cytological map location 14F4. There is experimental evidence that it has the molecular function</span>: SUMO binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: translation. 2 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • The gene Ribosomal protein S19a is referred to in FlyBase by the symbol Dmel\RpS19a (CG4464, FBgn0010412). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:16531912..16532953. It has the cytological map location 14F4. There is experimental evidence that it has the molecular function</span>: SUMO binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: translation. 2 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 156 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    cytosolic small ribosomal subunit [ISS][NAS]
    ribosome [NAS]
    Biological Process: translation [ISS][NAS]
    Molecular Function: SUMO binding [IPI]
    structural constituent of ribosome [ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGVTVKDID QHAVTKAVAV FLKKTGKLKV PDQMDIVKTA KFKELAPYDP DWFYVRCASI  60
   61 LRHLYHRSPA GVGSITKIYG GRKRNGVHPS HFCRAADGAA RKALQALEHA RLVEKHPDGG 120
  121 RKLSSIGQRD LDRIANQIVF KQRDAAKQTG PIVISK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..156] PSI-BLAST 53.0 No description for 2v7fA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  5.29433336630028 bayes_pls_golite062009
  • structural molecule activity
    		•  5.07265721693681 bayes_pls_golite062009
  • transcription regulator activity
    		•  4.44907471960058 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.97631536825798 bayes_pls_golite062009
  • DNA binding
    		•  3.93431504495991 bayes_pls_golite062009
  • binding
    		•  3.52874320222492 bayes_pls_golite062009
  • transcription factor activity
    		•  3.48782936574155 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.44917636781125 bayes_pls_golite062009
  • transcription activator activity
    		•  2.35901958718112 bayes_pls_golite062009
  • RNA binding
    		•  1.88227222208129 bayes_pls_golite062009
  • protein binding
    		•  1.80415286835431 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.54960543048317 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.2152419300113 bayes_pls_golite062009
  • transcription factor binding
    		•  0.13558561552621 bayes_pls_golite062009
  • ligase activity
    		•  0.104213649382856 bayes_pls_golite062009
  • mRNA binding
    		•  0.036043970189533 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle