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Protein Overview: ph-d-PA

General Information:
Name(s) found: ph-d-PA / FBpp0070417 [FlyBase]
Description(s) found:
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  • gi|24639270|ref|NP_524794.2| polyhomeotic distal, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|22831557|gb|AAF45726.3| polyhomeotic distal, isoform A [Drosophila melanogaster] [NCBI NR]
  • The gene polyhomeotic distal is referred to in FlyBase by the symbol Dmel\ph-d (CG3895, FBgn0004860). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:2010899..2017164. It has the cytological map location 2D2. There is experimental evidence that it has the molecular function</span>: chaperone binding; chromatin binding. There is experimental evidence that it is involved in the biological process</span>: syncytial blastoderm mitotic cell cycle. 50 alleles are reported. The phenotypes of these alleles are annotated with 17 unique terms, many of which group under: adult segment; peripheral nervous system; adult external prothorax; adult mesothoracic segment; adult abdominal segment; organ system; nervous system; nuclear part; external compound sense organ; nuclear chromosome; cuticle; humeral trabecule; metatarsus. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • >CG3895-PA translation from_gene[CG3895 ph-d FBgn0004860] seq_release:3 mol_weight=161979 cds_boundaries:(X:1,873,641..1,878,496[-]) aa_length:1537 transcript_info:[CG3895-RA seq_release:3] gene_info:[gene symbol:ph-d FBgn0004860 gene_boundaries:(X:1,8 [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9W523) CG3895 protein [DrosMelano7227.FASTAC.txt]
  • CG3895-PA [Drosophila melanogaster]gi|24639270|ref|NP_524794.2| CG3895-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=X:complement(2010899..2011650,2011714..2013524,2013584..2014034,2014096..2015657,2015720..2015757); ID=FBpp0070417; name=ph-d-PA; parent=FBgn0004860,FBtr0070433; dbxref=FlyBase:FBpp0070417,FlyBase_Annotation_IDs:CG3895-PA,GB_protein:AAF4 [fly-100309-contam.fasta]
  • CG3895-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • polyhomeotic distal CG3895-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=X:complement(2010899..2011650,2011714..2013524,2013584..2014034,2014096..2015657,2015720..2015757); ID=FBpp0070417; name=ph-d-PA; parent=FBgn0004860,FBtr0070433; dbxref=FlyBase:FBpp0070417,FlyBase_Annotation_IDs:CG3895-PA,GB_protein:AAF45726.3,REFSEQ:NP_524794,GB_protein:AAF45726; MD5=dbd0e510689f497c21d14fae3dec9cdf; length=1537; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:complement(2010899..2011650,2011714..2013524,2013584..2014034,2014096..2015657,2015720..2015757); ID=FBpp0070417; name=ph-d-PA; parent=FBgn0004860,FBtr0070433; dbxref=FlyBase:FBpp0070417,FlyBase_Annotation_IDs:CG3895-PA,GB_protein:AAF45726.3,REFSEQ:NP_524794,GB_protein:AAF45726; MD5=dbd0e510689f497c21d14fae3dec9cdf; length=1537; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Polyhomeotic distal, isoform A OS=Drosophila melanogaster GN=ph-d PE=1 SV=3 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=X:complement(2010899..2011650,2011714..2013524,2013584..2014034,2014096..2015657,2015720..2015757); ID=FBpp0070417; name=ph-d-PA; parent=FBgn0004860,FBtr0070433; dbxref=FlyBase:FBpp0070417,FlyBase_Annotation_IDs:CG3895-PA,GB_protein:AAF45726.3,REFSEQ:NP_524794,GB_protein:AAF45726,FlyMine:FBpp0070417,modMine:FBpp0070417; MD5=dbd0e510689f497c21d14fae3dec9cdf; length=1537; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • Polyhomeotic distal, isoform A OS=Drosophila melanogaster GN=ph-d PE=4 SV=3 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=X:complement(join(2121687..2121724,2120063..2121624,2119551..2120001,2117681..2119491,2116866..2117617)); ID=FBpp0070417; name=ph-d-PA; parent=FBgn0004860,FBtr0070433; dbxref=FlyBase:FBpp0070417,FlyBase_Annotation_IDs:CG3895-PA,GB_protein:AAF45726.3,REFSEQ:NP_524794,GB_protein:AAF45726,FlyMine:FBpp0070417,modMine:FBpp0070417; MD5=dbd0e510689f497c21d14fae3dec9cdf; length=1537; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:complement(join(2121687..2121724,2120063..2121624,2119551..2120001,2117681..2119491,2116866..2117617)); ID=FBpp0070417; name=ph-d-PA; parent=FBgn0004860,FBtr0070433; dbxref=FlyBase:FBpp0070417,FlyBase_Annotation_IDs:CG3895-PA,GB_protein:AAF45726.3,REFSEQ:NP_524794,GB_protein:AAF45726,FlyMine:FBpp0070417,modMine:FBpp0070417; MD5=dbd0e510689f497c21d14fae3dec9cdf; length=1537; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0070417 type=protein; loc=X:complement(join(2121687..2121724,2120063..2121624,2119551..2120001,2117681..2119491,2116866..2117617)); ID=FBpp0070417; name=ph-d-PA; parent=FBgn0004860,FBtr0070433; dbxref=FlyBase:FBpp0070417,FlyBase_Annotation_IDs:CG3895-PA,GB_protein:AAF45726.3,REFSEQ:NP_524794,GB_protein:AAF45726,FlyMine:FBpp0070417,modMine:FBpp0070417; MD5=dbd0e510689f497c21d14fae3dec9cdf; length=1537; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=X:complement(join(2121687..2121724,2120063..2121624,2119551..2120001,2117681..2119491,2116866..2117617)); ID=FBpp0070417; name=ph-d-PA; parent=FBgn0004860,FBtr0070433; dbxref=FlyBase:FBpp0070417,FlyBase_Annotation_IDs:CG3895-PA,GB_protein:AAF45726.3,REFSEQ:NP_524794,GB_protein:AAF45726,UniProt/TrEMBL:Q9W523,FlyMine:FBpp0070417,modMine:FBpp0070417; MD5=dbd0e510689f497c21d14fae3dec9cdf; length=1537; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 1537 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    PRC1 complex [TAS]
    nucleolus [IDA]
    chromatin [NAS]
    Biological Process: syncytial blastoderm mitotic cell cycle [IMP]
    chromatin silencing [NAS]
    Molecular Function: zinc ion binding [IEA]
    chaperone binding [IDA]
    chromatin binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHGFGAAPS VSVSGDTESE SATTIRTPPP SPEATTSVKV NSTTRVDPQR PLRCLETLAQ  60
   61 KAGISFDEDF AKSPSQSPSS KAARGSVGTP SIRRRHPLLP LSSRSPSAPD SKTTGRKLEK 120
  121 SQSPAQQVAA ATNVPLQISP EQLQQLYANN PYAIQVKQEF PTHTTSGSGT ELKHATNIME 180
  181 VQQQLQLQQQ LSEANGGGAA SAGAGGAASP ANSQQSQQQQ HSTAISTMSP MQLAAATGGV 240
  241 GGDWTQGRTV QLMQPSTSFL YPQMIVSGNL LHPGGLGQQP IQVITAGKPF QGNGPQMLTT 300
  301 TTQNAKQMIG GQAGFAGGNY ATCIPSNHNQ SPQTVLISPV NVISHSPQQQ QNLLQSMAAA 360
  361 AQQQQLTQQQ QQQLNQQQQQ LNQQQQQQQL TAALAKVGVD AQGKLAQKVV QKVTTTSSTV 420
  421 QAATGPGSTG STQTQQVQQV QQQQQQTTQT TQQCVQVSQS TLPVGVGGQS VQTAQLLNAG 480
  481 QAQQMQIPWF WQNAAGLQPF GSNQIILRNQ PDGTQGMFIQ QQPATQTLQT QQNQIIQCNV 540
  541 TQTPTKARTQ LDALAPKQQQ QQQQVGTTNQ TQQQQLAVAT AQLQQQQQQL TAAALQRPGA 600
  601 PVMPHNGTQV RPASSVSTQT AQNQSLLKAK MRNKQQPVRP ALATLKTEIG QVAGQNKVVG 660
  661 HLTTVQQQQQ ATNLQQVVNA AGNKMVVMST TGTPITLQNG QTLHAATAAG VDKQQQQLQL 720
  721 FQKQHILQQQ MLQQQIAAIQ MQQQQAAVQA QQQQQQQVSQ QQQVNAQQQQ AVAQQQQAVA 780
  781 QAQQQQREQQ QQVAQAQAQH QQALANATQQ ILQVAPNQFI TSHQQQQQQQ LHNQLIQQQL 840
  841 QQQAQAQVQA QVQAQAQQQQ QQREQQQNII QQIVVQQSTG ATSQQQQQQP QQQSGQLQLS 900
  901 SVPFSVSPSM TAEDIAGITS SALQEALSVS GAIFQTTKPI TCSSSTLPTS SVVTITSQSS 960
  961 TPLVTSSTVA SMQQAQTQGT QIHQHQQLIS ATIAGGSQQQ QQQQQLGLPS LTPTTPSPTT1020
 1021 NPILAMTSMM NATVGHLSTA PPVSVSSTAV TPSSGQLVTL SSASSGGGAG FPATPTKETP1080
 1081 SKGPTATLVP IDSPKTPVSG KDTCTTPKSS TPATVSASVE ASSSTGEALS NGDASDRSST1140
 1141 PSKGATTPTS KQSNAAVQPP SSTIPNSVSG KEEPKLTTCG SLTSATSTST TTTITNGIGV1200
 1201 ARTTASTAVS TASTTTTSSG TFTTSCTSTT TTTTSSISNG SKDLPKAMIK PNVLTHVIDG1260
 1261 FIIQEANEPF PVTRQRYADK DVSDEPPKKK ATMQEDIKLS GIASAPGSDM VACEQCGKME1320
 1321 HKAKLKRKRY CSPGCSRQAK NGIGGVGSGE TNGLGTGGIV GVDAMALVDR LDEAMAEEKM1380
 1381 QTESYQTVSD ALPIQAATPE VPPISMPVLA AMSTSSPLSL PLTLPLPIAI APTVSLPVVS1440
 1441 AGVVAPVLAI PSSNINGSDR PPISSWSVEE VSNFIRELPG CQDYVDDFIQ QEIDGQALLL1500
 1501 LKENHLVNAM GMKLGPALKI VAKVESIKEV PPGDVKD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..69] deduced N/A No confident structure predictions are available.
    2 View Details [70..132] deduced N/A No confident structure predictions are available.
    3 View Details [133..243] deduced N/A No confident structure predictions are available.
    4 View Details [244..485] deduced N/A No confident structure predictions are available.
    5 View Details [486..676] deduced N/A No confident structure predictions are available.
    6 View Details [677..889] deduced N/A No confident structure predictions are available.
    7 View Details [890..1101] deduced N/A No confident structure predictions are available.
    8 View Details [1102..1215] deduced N/A No confident structure predictions are available.
    9 View Details [1216..1303] deduced N/A No confident structure predictions are available.
    10 View Details [1304..1450] deduced N/A No confident structure predictions are available.
    11 View Details [1451..1537] PSI-BLAST 27.154902 Hetero SAM domain structure of Ph and Scm.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.
    7 No functions predicted.
    8 No functions predicted.
    9 No functions predicted.
    10 No functions predicted.
    11
    Term Confidence Notes
  • binding
    		•  0.633600780660145 bayes_pls_golite062009
  • protein binding
    		•  0.29861856894481 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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