YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ph-d-PA
Protein type: Transmembrane
Type Confidence: 0.42
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHGFGAAPS VSVSGDTESE SATTIRTPPP SPEATTSVKV NSTTRVDPQR PLRCLETLAQ  60
   61 KAGISFDEDF AKSPSQSPSS KAARGSVGTP SIRRRHPLLP LSSRSPSAPD SKTTGRKLEK 120
  121 SQSPAQQVAA ATNVPLQISP EQLQQLYANN PYAIQVKQEF PTHTTSGSGT ELKHATNIME 180
  181 VQQQLQLQQQ LSEANGGGAA SAGAGGAASP ANSQQSQQQQ HSTAISTMSP MQLAAATGGV 240
  241 GGDWTQGRTV QLMQPSTSFL YPQMIVSGNL LHPGGLGQQP IQVITAGKPF QGNGPQMLTT 300
  301 TTQNAKQMIG GQAGFAGGNY ATCIPSNHNQ SPQTVLISPV NVISHSPQQQ QNLLQSMAAA 360
  361 AQQQQLTQQQ QQQLNQQQQQ LNQQQQQQQL TAALAKVGVD AQGKLAQKVV QKVTTTSSTV 420
  421 QAATGPGSTG STQTQQVQQV QQQQQQTTQT TQQCVQVSQS TLPVGVGGQS VQTAQLLNAG 480
  481 QAQQMQIPWF WQNAAGLQPF GSNQIILRNQ PDGTQGMFIQ QQPATQTLQT QQNQIIQCNV 540
  541 TQTPTKARTQ LDALAPKQQQ QQQQVGTTNQ TQQQQLAVAT AQLQQQQQQL TAAALQRPGA 600
  601 PVMPHNGTQV RPASSVSTQT AQNQSLLKAK MRNKQQPVRP ALATLKTEIG QVAGQNKVVG 660
  661 HLTTVQQQQQ ATNLQQVVNA AGNKMVVMST TGTPITLQNG QTLHAATAAG VDKQQQQLQL 720
  721 FQKQHILQQQ MLQQQIAAIQ MQQQQAAVQA QQQQQQQVSQ QQQVNAQQQQ AVAQQQQAVA 780
  781 QAQQQQREQQ QQVAQAQAQH QQALANATQQ ILQVAPNQFI TSHQQQQQQQ LHNQLIQQQL 840
  841 QQQAQAQVQA QVQAQAQQQQ QQREQQQNII QQIVVQQSTG ATSQQQQQQP QQQSGQLQLS 900
  901 SVPFSVSPSM TAEDIAGITS SALQEALSVS GAIFQTTKPI TCSSSTLPTS SVVTITSQSS 960
  961 TPLVTSSTVA SMQQAQTQGT QIHQHQQLIS ATIAGGSQQQ QQQQQLGLPS LTPTTPSPTT1020
 1021 NPILAMTSMM NATVGHLSTA PPVSVSSTAV TPSSGQLVTL SSASSGGGAG FPATPTKETP1080
 1081 SKGPTATLVP IDSPKTPVSG KDTCTTPKSS TPATVSASVE ASSSTGEALS NGDASDRSST1140
 1141 PSKGATTPTS KQSNAAVQPP SSTIPNSVSG KEEPKLTTCG SLTSATSTST TTTITNGIGV1200
 1201 ARTTASTAVS TASTTTTSSG TFTTSCTSTT TTTTSSISNG SKDLPKAMIK PNVLTHVIDG1260
 1261 FIIQEANEPF PVTRQRYADK DVSDEPPKKK ATMQEDIKLS GIASAPGSDM VACEQCGKME1320
 1321 HKAKLKRKRY CSPGCSRQAK NGIGGVGSGE TNGLGTGGIV GVDAMALVDR LDEAMAEEKM1380
 1381 QTESYQTVSD ALPIQAATPE VPPISMPVLA AMSTSSPLSL PLTLPLPIAI APTVSLPVVS1440
 1441 AGVVAPVLAI PSSNINGSDR PPISSWSVEE VSNFIRELPG CQDYVDDFIQ QEIDGQALLL1500
 1501 LKENHLVNAM GMKLGPALKI VAKVESIKEV PPGDVKD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle