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Protein Overview: FBpp0312066, RpS3-PA

General Information:
Name(s) found: FBpp0312066 [FlyBase]
RpS3-PA / FBpp0083802 [FlyBase]
Description(s) found:
Found 34 descriptions.
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  • type=protein; loc=3R:join(19184577..19184612,19184876..19185580); ID=FBpp0312066; name=RpS3-PB; parent=FBgn0002622,FBtr0346349; dbxref=FlyBase:FBpp0312066,FlyBase_Annotation_IDs:CG6779-PB; MD5=afce2f20264890e9f016128a095a23e6; length=246; release=r5.56; species=Dmel; [FlyBase]
  • The gene Ribosomal protein S3 is referred to in FlyBase by the symbol Dmel\RpS3 (CG6779, FBgn0002622). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:19184525..19185697. It has the cytological map location 94E13. There is experimental evidence that it has the molecular function</span>: oxidized purine base lesion DNA N-glycosylase activity; DNA-(apurinic or apyrimidinic site) lyase activity; SUMO binding. There is experimental evidence that it is involved in the biological process</span>: cellular response to DNA damage stimulus; negative regulation of neuron apoptosis; DNA repair. 12 alleles are reported. The phenotypes of these alleles are annotated with 11 unique terms, many of which group under: organ system; anatomical structure; peripheral nervous system; nervous system; imaginal precursor; female reproductive system; germarium; dorsal thoracic disc; external compound sense organ; female germline cyst; adult segment. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 246 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    nucleus [IDA][NAS]
    cytosolic small ribosomal subunit [ISS][NAS]
    cytoplasm [NAS]
    nuclear matrix [IDA]
    ribosome [NAS]
    Biological Process: DNA repair [IGI][NAS]
    response to DNA damage stimulus [IMP]
    translation [ISS][NAS]
    negative regulation of neuron apoptosis [IMP]
    Molecular Function: SUMO binding [IPI]
    RNA binding [IEA]
    structural constituent of ribosome [ISS][NAS]
    DNA-(apurinic or apyrimidinic site) lyase activity [IDA][NAS]
    oxidized purine base lesion DNA N-glycosylase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNANLPISKK RKFVSDGIFK AELNEFLTRE LAEDGYSGVE VRVTPSRTEI IIMATKTQQV  60
   61 LGEKGRRIRE LTAMVQKRFN FETGRIELYA EKVAARGLCA IAQAESLRYK LTGGLAVRRA 120
  121 CYGVLRYIME SGAKGCEVVV SGKLRGQRAK SMKFVDGLMI HSGDPCNDYV ETATRHVLLR 180
  181 QGVLGIKVKV MLPYDPKNKI GPKKPLPDNV SVVEPKEEKI YETPETEYKI PPPSKPLDDL 240
  241 SEAKVL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..246] PSI-BLAST 49.39794 Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle