YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0312066, RpS3-PA
Organism:	Drosophila melanogaster
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0312066, RpS3-PA.

Description	E-value	Query Range	Subject Range
gi\|54637431, gi\|... - gi\|54637431\|gb\|EAL26833.1\| GA19858 [Drosophila pseudoobscura pseudoobscura], gi\|125772881\|ref\|XP_001... gi\|194745943, gi... - gi\|194745943\|ref\|XP_001955444.1\| GF16244 [Drosophila ananassae], gi\|190628481\|gb\|EDV44005.1\| GF16244... gi\|125772881\|ref... - GA19858-PA [Drosophila pseudoobscura], GA19858 [Drosophila pseudoobscura pseudoobscura] gi\|194116966, gi... - gi\|195158647\|ref\|XP_002020197.1\| GL13632 [Drosophila persimilis], gi\|194116966\|gb\|EDW39009.1\| GL1363...	275.0	[0..1]	[246..1]
gi\|37595356 - gi\|37595356\|gb\|AAQ94564.1\| ribosomal protein S3 [Danio rerio]	275.0	[0..3]	[237..1]
RS3_PONAB - 40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1 gi\|62897657 - gi\|62897657\|dbj\|BAD96768.1\| ribosomal protein S3 variant [Homo sapiens] RS3_PONPY - 40S ribosomal protein S3 - Pongo pygmaeus (Orangutan)	274.0	[0..3]	[236..1]
gi\|74222288 - gi\|74222288\|dbj\|BAE26946.1\| unnamed protein product [Mus musculus]	273.0	[0..3]	[236..1]
gi\|60652571 - gi\|60652571\|gb\|AAX28980.1\| ribosomal protein S3 [synthetic construct]	273.0	[0..3]	[236..1]
gi\|70850 - gi\|70850\|pir\|\|R3RT3 ribosomal protein S3, cytosolic [validated] - rat	273.0	[0..3]	[236..1]
RPS3 - ribosomal protein S3 gi\|208967330, gi... - gi\|208967330\|dbj\|BAG73679.1\| ribosomal protein S3 [synthetic construct], gi\|123999104\|gb\|ABM87135.1\|... RS3_BOVIN - 40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1 CCDS8236.1_1 - null gi\|223973891 - gi\|223973891\|gb\|ACN31133.1\| unknown [Zea mays] gi\|109107963 - gi\|109107963\|ref\|XP_001086020.1\| PREDICTED: similar to ribosomal protein S3 [Macaca mulatta] gi\|187609257 - gi\|187609257\|pdb\|2ZKQ\|CC Chain c, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Compl... RS3_PIG - 40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=1 SV=1	273.0	[0..3]	[236..1]
gi\|46811251 - gi\|46811251\|gb\|AAT01919.1\| 40S ribosomal protein S3 [Pseudopleuronectes americanus]	273.0	[0..3]	[237..1]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNANLPISKK RKFVSDGIFK AELNEFLTRE LAEDGYSGVE VRVTPSRTEI IIMATKTQQV  60
   61 LGEKGRRIRE LTAMVQKRFN FETGRIELYA EKVAARGLCA IAQAESLRYK LTGGLAVRRA 120
  121 CYGVLRYIME SGAKGCEVVV SGKLRGQRAK SMKFVDGLMI HSGDPCNDYV ETATRHVLLR 180
  181 QGVLGIKVKV MLPYDPKNKI GPKKPLPDNV SVVEPKEEKI YETPETEYKI PPPSKPLDDL 240
  241 SEAKVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.39794
Match:	1s1hC
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits