YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: lmd-PB

General Information:
Name(s) found: lmd-PB / FBpp0083757 [FlyBase]
Description(s) found:
Found 22 descriptions.
SHOW ALL
  • The gene lame duck is referred to in FlyBase by the symbol Dmel\lmd (CG4677, FBgn0039039). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:18846944..18852435. It has the cytological map location 94D9-94D10. Based on sequence similarity, it is predicted to have molecular function</span>: transcription factor activity. There is experimental evidence that it is involved in the biological process</span>: myoblast fusion; somatic muscle development; skeletal muscle tissue development; muscle organ development. 9 alleles are reported. The phenotypes of these alleles are annotated with: pharyngeal muscle; embryonic muscle system; embryonic somatic muscle; embryonic myoblast; embryonic visceral muscle. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 866 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    intracellular [IEA]
    Biological Process: muscle organ development [IMP][TAS]
    skeletal muscle tissue development [IMP]
    myoblast fusion [IMP]
    regulation of transcription, DNA-dependent [ISS]
    regulation of transcription [ISS]
    somatic muscle development [IMP]
    Molecular Function: transcription factor activity [ISS]
    zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSLKTSQS GGMYVKTSSI SGISSISGKE AASCYGGFMS PPLSANITAN NGEREMFRVP  60
   61 GAKVETNESY ACGELQFPDF SHLCFAAETP NSVFSDCHNY AGQDQQQDSD QDDIVCAAAE 120
  121 NTGMPYQQGQ YTQLNREDIF RFEPEDIARL TGESELPGML QHPQTPYTPY TPYTPYTPCS 180
  181 AQNSQYAVQP ANDSINLDID YFNYDEINCQ SKNQSPCSSP HLDAWLNFNL GEISAAASSS 240
  241 AASPKLGNVF EEQVKEEASP AKLPSMNSTF GTPKCIPMCA SNYEDYANLY QQGSGYSTEN 300
  301 YHNNMAQVVE KPNREHKAIW TIDELDELML GEQQQFLQHH LQQQHLQEQQ EQLHQPHGQE 360
  361 QQTQNCKDDL VNYLSDEFIK AEEFRSLDSD DDENYNEEED DLDNDVFAPP AESDPKPDST 420
  421 CCDPEAEPEN EVIPLICRWT GCDEEFPHQQ AFVEHIEKCH VDVRKGEDFS CFWLDCPRRY 480
  481 KPFNARYKLL IHMRVHSGEK PNKCPFPGCN KAFSRLENLK IHQRSHTGER PYGCQYKGCL 540
  541 KAFSNSSDRA KHQRTHYDTK PYACQLPGCT KRYTDPSSLR KHVKNHALRN ANGQLRRKSA 600
  601 GGASVPPSGP KKAAKTRRHS ESALVQRGVG AGVGVAVPSA PGDQRQHRSN SCSEALLLQQ 660
  661 HQQQQQQQQQ QQKQHQPENE RTTDRSNCGT GVAANNNSMN FNELSNCIVI IEHNQSGGPA 720
  721 GPATLATATA TTTATATYGN GNMAPAPETE VLSVCSGGGS SNSNSNNNRY NANINQLSEL 780
  781 EQLLTTAKPT GTPAASANGI SLANNNGRAN GDSKCHLSEF VSFEYVTKYL TDVYEPQCKS 840
  841 PQPPANFHLQ PEFDNSFDML DFPQFI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..273] deduced N/A No confident structure predictions are available.
    2 View Details [274..460] PSI-BLAST 22.221849 Designed zinc finger protein
    3 View Details [461..595] PSI-BLAST 27.69897 Five-finger GLI1
    4 View Details [596..685] MSA 1.456995 View MSA. No confident structure predictions are available.
    5 View Details [686..866] PSI-BLAST 54.69897 No description for 2i13A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  4.70988788192472 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.58713908116892 bayes_pls_golite062009
  • DNA binding
    		•  4.56219307357342 bayes_pls_golite062009
  • transcription factor activity
    		•  3.50954949535763 bayes_pls_golite062009
  • binding
    		•  3.10743787485868 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.31369346002275 bayes_pls_golite062009
  • transcription activator activity
    		•  2.19952417915035 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.64349785387632 bayes_pls_golite062009
  • chromatin binding
    		•  1.53640935908107 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.42975942698743 bayes_pls_golite062009
  • transcription factor binding
    		•  1.39608963544799 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.0497955246512 bayes_pls_golite062009
  • protein binding
    		•  1.00484935878505 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.77874411480713 bayes_pls_golite062009
  • catalytic activity
    		•  0.245893663605433 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.10558148421807 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle