| Protein: | lmd-PB |
| Organism: | Drosophila melanogaster |
| Length: | 866 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lmd-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
888.0 | [0..77] | [861..320] |
|
Region A: Residues: [1-273] |
1 11 21 31 41 51
| | | | | |
1 MSSSLKTSQS GGMYVKTSSI SGISSISGKE AASCYGGFMS PPLSANITAN NGEREMFRVP 60
61 GAKVETNESY ACGELQFPDF SHLCFAAETP NSVFSDCHNY AGQDQQQDSD QDDIVCAAAE 120
121 NTGMPYQQGQ YTQLNREDIF RFEPEDIARL TGESELPGML QHPQTPYTPY TPYTPYTPCS 180
181 AQNSQYAVQP ANDSINLDID YFNYDEINCQ SKNQSPCSSP HLDAWLNFNL GEISAAASSS 240
241 AASPKLGNVF EEQVKEEASP AKLPSMNSTF GTP
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [274-460] |
1 11 21 31 41 51
| | | | | |
1 KCIPMCASNY EDYANLYQQG SGYSTENYHN NMAQVVEKPN REHKAIWTID ELDELMLGEQ 60
61 QQFLQHHLQQ QHLQEQQEQL HQPHGQEQQT QNCKDDLVNY LSDEFIKAEE FRSLDSDDDE 120
121 NYNEEEDDLD NDVFAPPAES DPKPDSTCCD PEAEPENEVI PLICRWTGCD EEFPHQQAFV 180
181 EHIEKCH
|
| Detection Method: | |
| Confidence: | 22.221849 |
| Match: | 1meyC |
| Description: | Designed zinc finger protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [461-595] |
1 11 21 31 41 51
| | | | | |
1 VDVRKGEDFS CFWLDCPRRY KPFNARYKLL IHMRVHSGEK PNKCPFPGCN KAFSRLENLK 60
61 IHQRSHTGER PYGCQYKGCL KAFSNSSDRA KHQRTHYDTK PYACQLPGCT KRYTDPSSLR 120
121 KHVKNHALRN ANGQL
|
| Detection Method: | |
| Confidence: | 27.69897 |
| Match: | 2gliA |
| Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.31369346002275 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| transcription repressor activity | 1.64349785387632 | bayes_pls_golite062009 |
| chromatin binding | 1.53640935908107 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.0497955246512 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.10558148421807 | bayes_pls_golite062009 |
|
Region A: Residues: [596-685] |
1 11 21 31 41 51
| | | | | |
1 RRKSAGGASV PPSGPKKAAK TRRHSESALV QRGVGAGVGV AVPSAPGDQR QHRSNSCSEA 60
61 LLLQQHQQQQ QQQQQQQKQH QPENERTTDR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [686-866] |
1 11 21 31 41 51
| | | | | |
1 SNCGTGVAAN NNSMNFNELS NCIVIIEHNQ SGGPAGPATL ATATATTTAT ATYGNGNMAP 60
61 APETEVLSVC SGGGSSNSNS NNNRYNANIN QLSELEQLLT TAKPTGTPAA SANGISLANN 120
121 NGRANGDSKC HLSEFVSFEY VTKYLTDVYE PQCKSPQPPA NFHLQPEFDN SFDMLDFPQF 180
181 I
|
| Detection Method: | |
| Confidence: | 54.69897 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
