YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: FBpp0293863, CG5...

General Information:
Name(s) found: FBpp0293863 [FlyBase]
CG5380-PA / FBpp0083629 [FlyBase]
Description(s) found:
Found 32 descriptions.
SHOW ALL
  • type=protein; loc=3R:complement(18191937..18192425,18192484..18192876); ID=FBpp0293863; name=CG5380-PB; parent=FBgn0038951,FBtr0305320; dbxref=REFSEQ:NP_001247237,GB_protein:AFH06555,FlyBase:FBpp0293863,FlyBase_Annotation_IDs:CG5380-PB; MD5=2967fc7fdc5d7c1cc5fbf4f60eef87f9; length=293; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG5380 (CG5380, FBgn0038951). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:18191802..18192881. It has the cytological map location 94A6. Based on sequence similarity, it is predicted to have molecular function</span>: DNA-directed RNA polymerase activity. It is reported to be involved in the biological process</span>: transcription from RNA polymerase III promoter. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 293 amino acids

    Gene Ontology:
    Cellular Component: nucleus [NAS]
    DNA-directed RNA polymerase III complex [ISS]
    Biological Process: transcription from RNA polymerase III promoter [NAS]
    transcription [IEA]
    Molecular Function: DNA binding [IEA]
    DNA-directed RNA polymerase activity [ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEVSQLLL AVVQGIPAGA TNDDLTKALP DVPAATRVEA LNILLQEGGI EILKKGEKLV  60
   61 YRAKDPEKKS ALPKDADNEE KVVYGIVEEG GNKGIWIRDI RMKSNLNMIQ LNKILKNLET 120
  121 KKLIKAVKSV NASKKKVYML YNLEPDLSIT GGAWYQDQDF EVEFVDVLNQ QCLRFLQMKR 180
  181 DSAEKKREGP LAFKQMSCCT VNEVQKFISD LGISKVNLAE ADLETILKTV VYDGNAERVR 240
  241 QQDGSFVYRA VNAPLPPTGL VQMPCGICPV IKNCSNCGDV TAITCEYMRD WLD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..74] FFAS03 5.5 No description for 2dk8A was found.
    2 View Details [75..130] PSI-BLAST 26.221849 No description for 2yu3A was found.
    3 View Details [131..293] Pfam 45.337242 No description for PF05158.3 was found. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  5.23858959608048 bayes_pls_golite062009
  • DNA binding
    		•  4.78517210147551 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.72059012764202 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  4.34522534923857 bayes_pls_golite062009
  • RNA polymerase activity
    		•  4.34522534923857 bayes_pls_golite062009
  • transcription factor activity
    		•  4.02736190679869 bayes_pls_golite062009
  • binding
    		•  3.37660003833383 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  2.82260867370675 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.21432668306508 bayes_pls_golite062009
  • transferase activity
    		•  2.21031006146354 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  2.16473039675898 bayes_pls_golite062009
  • transcription activator activity
    		•  2.13702350917359 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.9708626903609 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.50332889556988 bayes_pls_golite062009
  • transcription factor binding
    		•  0.752335897765285 bayes_pls_golite062009
  • protein binding
    		•  0.726445167461826 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.451714629708561 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle