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Protein Overview: GATAe-PA

General Information:
Name(s) found: GATAe-PA / FBpp0082672 [FlyBase]
Description(s) found:
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  • gi|37951320|dbj|BAD00020.1| transcription factor dGATAe [Drosophila melanogaster] [NCBI NR]
  • gi|28603696|gb|AAO47880.1| LD08432p [Drosophila melanogaster] [NCBI NR]
  • gi|24647326|ref|NP_650516.2| GATAe [Drosophila melanogaster] [NCBI NR]
  • gi|23171431|gb|AAF55262.2| GATAe [Drosophila melanogaster] [NCBI NR]
  • The gene GATAe is referred to in FlyBase by the symbol Dmel\GATAe (CG10278, FBgn0038391). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:11837993..11844855. It has the cytological map location 89A12. Based on sequence similarity, it is predicted to have molecular function</span>: general RNA polymerase II transcription factor activity. There is experimental evidence that it is involved in the biological process</span>: antimicrobial humoral response. 5 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG10278-PA translation from_gene[CG10278 GATAe FBgn0038391] seq_release:3 mol_weight=80938 cds_boundaries:(3R:11,838,479..11,844,490[+]) aa_length:746 transcript_info:[CG10278-RA seq_release:3] gene_info:[gene symbol:GATAe FBgn0038391 gene_boundaries: [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VF00) CG10278 protein (LD08432p) [DrosMelano7227.FASTAC.txt]
  • CG10278-PA [Drosophila melanogaster]gi|37951320|dbj|BAD00020.1| transcription factor dGATAe [Drosophila melanogaster]gi|28603696|gb|AAO47880.1| LD08432p [Drosophila melanogaster]gi|24647326|ref|NP_650516.2| CG10278-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:join(11838461..11838505,11841950..11842287,11842431..11843364,11843433..11843928,11843987..11844317,11844379..11844475); ID=FBpp0082672; name=GATAe-PA; parent=FBgn0038391,FBtr0083218; dbxref=FlyBase:FBpp0082672,FlyBase_Annotation_IDs: [fly-100309-contam.fasta]
  • CG10278-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • transcription factor dGATAe [Drosophila melanogaster] [nr-271106-contam.fasta]
  • LD08432p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • GATAe CG10278-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:join(11838461..11838505,11841950..11842287,11842431..11843364,11843433..11843928,11843987..11844317,11844379..11844475); ID=FBpp0082672; name=GATAe-PA; parent=FBgn0038391,FBtr0083218; dbxref=FlyBase:FBpp0082672,FlyBase_Annotation_IDs:CG10278-PA,GB_protein:AAF55262.2,REFSEQ:NP_650516,GB_protein:AAF55262; MD5=659db799ea890a1ac46ddcb37f94a637; length=746; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:join(11838461..11838505,11841950..11842287,11842431..11843364,11843433..11843928,11843987..11844317,11844379..11844475); ID=FBpp0082672; name=GATAe-PA; parent=FBgn0038391,FBtr0083218; dbxref=FlyBase:FBpp0082672,FlyBase_Annotation_IDs:CG10278-PA,GB_protein:AAF55262.2,REFSEQ:NP_650516,GB_protein:AAF55262; MD5=659db799ea890a1ac46ddcb37f94a637; length=746; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • GATAe OS=Drosophila melanogaster GN=GATAe PE=2 SV=2 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:join(11838461..11838505,11841950..11842287,11842431..11843364,11843433..11843928,11843987..11844317,11844379..11844475); ID=FBpp0082672; name=GATAe-PA; parent=FBgn0038391,FBtr0083218; dbxref=FlyBase:FBpp0082672,FlyBase_Annotation_IDs:CG10278-PA,GB_protein:AAF55262.2,REFSEQ:NP_650516,GB_protein:AAF55262,FlyMine:FBpp0082672,modMine:FBpp0082672; MD5=659db799ea890a1ac46ddcb37f94a637; length=746; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:join(16012739..16012783,16016228..16016565,16016709..16017642,16017711..16018206,16018265..16018595,16018657..16018753); ID=FBpp0082672; name=GATAe-PA; parent=FBgn0038391,FBtr0083218; dbxref=FlyBase:FBpp0082672,FlyBase_Annotation_IDs:CG10278-PA,GB_protein:AAF55262.2,REFSEQ:NP_650516,GB_protein:AAF55262,FlyMine:FBpp0082672,modMine:FBpp0082672; MD5=659db799ea890a1ac46ddcb37f94a637; length=746; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(16012739..16012783,16016228..16016565,16016709..16017642,16017711..16018206,16018265..16018595,16018657..16018753); ID=FBpp0082672; name=GATAe-PA; parent=FBgn0038391,FBtr0083218; dbxref=FlyBase:FBpp0082672,FlyBase_Annotation_IDs:CG10278-PA,GB_protein:AAF55262.2,REFSEQ:NP_650516,GB_protein:AAF55262,FlyMine:FBpp0082672,modMine:FBpp0082672; MD5=659db799ea890a1ac46ddcb37f94a637; length=746; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • GATAe, isoform A OS=Drosophila melanogaster GN=GATAe PE=2 SV=2 [DROME.fasta.20160308]
  • FBpp0082672 type=protein; loc=3R:join(16012739..16012783,16016228..16016565,16016709..16017642,16017711..16018206,16018265..16018595,16018657..16018753); ID=FBpp0082672; name=GATAe-PA; parent=FBgn0038391,FBtr0083218; dbxref=FlyBase:FBpp0082672,FlyBase_Annotation_IDs:CG10278-PA,GB_protein:AAF55262.2,REFSEQ:NP_650516,GB_protein:AAF55262,FlyMine:FBpp0082672,modMine:FBpp0082672; MD5=659db799ea890a1ac46ddcb37f94a637; length=746; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:join(16012739..16012783,16016228..16016565,16016709..16017642,16017711..16018206,16018265..16018595,16018657..16018753); ID=FBpp0082672; name=GATAe-PA; parent=FBgn0038391,FBtr0083218; dbxref=FlyBase:FBpp0082672,FlyBase_Annotation_IDs:CG10278-PA,GB_protein:AAF55262.2,REFSEQ:NP_650516,GB_protein:AAF55262,UniProt/TrEMBL:Q9VF00,FlyMine:FBpp0082672,modMine:FBpp0082672; MD5=659db799ea890a1ac46ddcb37f94a637; length=746; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 746 amino acids

    Gene Ontology:
    Cellular Component: nucleus [NAS]
    Biological Process: endoderm development [NAS]
    regulation of transcription, DNA-dependent [IEA]
    antimicrobial humoral response [IMP]
    Molecular Function: zinc ion binding [IEA]
    transcription factor activity [IEA]
    general RNA polymerase II transcription factor activity [ISS][NAS]
    sequence-specific DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCKTISPSV NMQLKMEQQT TQQQQQQQQQ QQQQQQLQQQ QHQALTKQQL QLLDKIKLES  60
   61 SNGADQLAQQ TANNLDEQQE QQQQHQQQAA TSVGVVVQTG QAGVSEPEEQ YVVVPRNQRR 120
  121 ILTTAGTLEL NEAREGEPST NASNASSGSA SDSHIEYQRS AHQSPGATHY VQMAPRNAEV 180
  181 TEQVGAAAGA PPGTIFAYPI ICNGDDVAAI KIETLEKGEA TGESQQQQQQ LQQHQHQQQQ 240
  241 QCPTPNGASY GETIVISSEA EALQHHHQQQ QQHQQQQHQQ QHHQHQAAAA ASAAAQTVHI 300
  301 ATSSHGGTVR FVTEDVRFTT AGPETSASNM YYDVPVVDGS VHANESKTYA DLGNAYAPFP 360
  361 PSSSFSSNSY AATLQQGNTI YSVPGTGQFL AKSESGLNQT GLLRQTGPAT FQTISFEGGN 420
  421 GIEPLWASPA PPEYQSVQFS NFHPQVIDEY GSGNMSTSHW PPASSIGQYD GSLVTASSTS 480
  481 SPNHELKCEN CHGPFLRKGS EYFCPNCPAF MRMAPRITQR QAKPKAAAAP NNRRNGVTCA 540
  541 NCQTNSTTLW RRNNEGNPVC NACGLYYKLH NMNRPLSMKK EGIQKRKRKP KNNGGAPMHR 600
  601 APLPSMSQGV NLMANSPLYP SQVPVSMLNS QLNSQQNSSP ELHDMSTTGQ AGGQRVVSIS 660
  661 LNATAPPTPD GTLNMSARHH VTGESHSPYS QQSTPQSQSP HLPGTVPINR QIVQPVPTIE 720
  721 SSRSSNTELT PSVITRTGLP ERSSNN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..135] deduced N/A No confident structure predictions are available.
    2 View Details [136..259] deduced N/A No confident structure predictions are available.
    3 View Details [260..359] MSA 2.219985 View MSA. No confident structure predictions are available.
    4 View Details [360..530] deduced N/A No confident structure predictions are available.
    5 View Details [531..605] PSI-BLAST 7.09691 Erythroid transcription factor GATA-1
    6 View Details [606..746] MSA 5.200984 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • binding
    		•  2.52732993750126 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.70015379754395 bayes_pls_golite062009
  • DNA binding
    		•  1.65515523003574 bayes_pls_golite062009
  • ligand-dependent nuclear receptor activity
    		•  1.50367193346192 bayes_pls_golite062009
  • protein binding
    		•  1.41749048987708 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.36224073182023 bayes_pls_golite062009
  • transcription factor activity
    		•  1.14669021380366 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.0340476173844 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.701499822197 bayes_pls_golite062009
  • transcription activator activity
    		•  0.6614529953701 bayes_pls_golite062009
  • transcription factor binding
    		•  0.20735798780397 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.10722537662857 bayes_pls_golite062009
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
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