YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: rin-PE, FBpp0312...

General Information:
Name(s) found: FBpp0312064 [FlyBase]
FBpp0312063 [FlyBase]
rin-PE / FBpp0082267 [FlyBase]
rin-PB / FBpp0082265 [FlyBase]
Description(s) found:
Found 74 descriptions.
SHOW ALL
  • type=protein; loc=3R:join(9474791..9476219,9476531..9476781,9476896..9477288); ID=FBpp0312064; name=rin-PG; parent=FBgn0015778,FBtr0346347; dbxref=FlyBase:FBpp0312064,FlyBase_Annotation_IDs:CG9412-PG; MD5=3d141bc378bcfd81dcc7417d76d5dc94; length=690; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=3R:join(9474791..9476219,9476531..9476781,9476896..9477288); ID=FBpp0312063; name=rin-PF; parent=FBgn0015778,FBtr0346346; dbxref=FlyBase:FBpp0312063,FlyBase_Annotation_IDs:CG9412-PF; MD5=3d141bc378bcfd81dcc7417d76d5dc94; length=690; release=r5.56; species=Dmel; [FlyBase]
  • The gene rasputin is referred to in FlyBase by the symbol Dmel\rin (CG9412, FBgn0015778). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:9472687..9478761. It has the cytological map location 87F6-87F7. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding; SH3 domain binding; protein binding. There is experimental evidence that it is involved in the biological process</span>: Ras protein signal transduction; compound eye photoreceptor fate commitment; ommatidial rotation. 17 alleles are reported. The phenotypes of these alleles are annotated with: eye disc; eye; eye photoreceptor cell; wing; ommatidial precursor cluster; ommatidium. It has 5 annotated transcripts and 5 annotated polypeptides. [FlyBase]
  • The gene rasputin is referred to in FlyBase by the symbol Dmel\rin (CG9412, FBgn0015778). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:9472687..9478761. It has the cytological map location 87F6-87F7. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding; SH3 domain binding; protein binding. There is experimental evidence that it is involved in the biological process</span>: Ras protein signal transduction; compound eye photoreceptor fate commitment; ommatidial rotation. 17 alleles are reported. The phenotypes of these alleles are annotated with: eye disc; eye; eye photoreceptor cell; wing; ommatidial precursor cluster; ommatidium. It has 5 annotated transcripts and 5 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 690 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    catalytic step 2 spliceosome [IDA]
    precatalytic spliceosome [IDA]
    cytosol [IDA]
    Biological Process: compound eye photoreceptor fate commitment [IMP]
    ommatidial rotation [IMP]
    Ras protein signal transduction [IGI]
    transport [IEA]
    nuclear mRNA splicing, via spliceosome [IC]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    protein binding [ISS]
    mRNA binding [ISS]
    SH3 domain binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMDATQSQQ PSPQSVGREF VRQYYTLLNK APNHLHRFYN HNSSYIHGES KLVVGQREIH  60
   61 NRIQQLNFND CHAKISQVDA QATLGNGVVV QVTGELSNDG QPMRRFTQTF VLAAQSPKKY 120
  121 YVHNDIFRYQ DLYIEDEQDG ESRSENDEEH DVQVVGGTVD QAVQVAGDVV AQQPQQQQAP 180
  181 PQPQAQVVVP QQVAPVAAGG AAPQQIFYPL PAGAAAGRPV AVLPPAPQAA AVPLPAQFTV 240
  241 PPPQPIQNGV VSHEELQQQQ VLVPPSVSPL VQQQQPTGTP VLPIVPVPSA GFQQSPLVAP 300
  301 QLIQQQQQQQ PAQLPPQQQQ QQQPIQQQQP LQQQQQPLAE PEEVEVAPRQ QKPPTPVEDF 360
  361 KTIHEQQQQE KYEAAKQQQN EPKTYANLFK STSSSPSGFV NAALQQQQQL QQQQQQQQSI 420
  421 SSNTYNSSSA TSGGGNGSQV SYSTTASSYN NSNGNSRLDN GGPLPQRNNS IRNNKGDFEQ 480
  481 RRSSNTQQFG DNQQLFLGNI PHHASEDDLR EIFSRFGNVL ELRILSKAGN KVPPGMRSPL 540
  541 NYGFITYDDP EAVQKCLANC PLYFPENSPD GQKLNVEEKK PRVRNDMVPR QQIGGNNLNN 600
  601 NMGRLGGNNG PQSRPMGNNN GSGGGMMRNN AGGNNLRQGG GGGNGAPRLG GGGGFGQRQD 660
  661 NRTGGGNNQS NGPLRGAGNG QSGGGNYGRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..134] PSI-BLAST 30.522879 Nuclear transport factor-2 (NTF2)
    2 View Details [135..216] deduced N/A No confident structure predictions are available.
    3 View Details [217..418] MSA 2.235995 View MSA. No confident structure predictions are available.
    4 View Details [419..597] PSI-BLAST 33.221849 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    5 View Details [598..690] FFAS03 1.02 Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.88422211140837 bayes_pls_golite062009
  • protein binding
    		•  1.34243535208605 bayes_pls_golite062009
  • protein transporter activity
    		•  0.960383711156379 bayes_pls_golite062009
  • transporter activity
    		•  0.55283159394909 bayes_pls_golite062009
  • RNA binding
    		•  0.541310012083998 bayes_pls_golite062009
  • Ran GTPase binding
    		•  0.437541267934309 bayes_pls_golite062009
  • small GTPase binding
    		•  0.16703540602196 bayes_pls_golite062009
  • GTPase binding
    		•  0.15019810567677 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  3.00411894202318 bayes_pls_golite062009
  • RNA binding
    		•  2.99069397581023 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.31150433509655 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • mRNA binding
    		•  0.505477067109476 bayes_pls_golite062009
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle