| Protein: | rin-PE, FBpp0312... |
| Organism: | Drosophila melanogaster |
| Length: | 690 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rin-PE, FBpp0312....
| Description | E-value | Query Range |
Subject Range |
|
|
244.0 | [0..1] | [675..1] |
|
Region A: Residues: [1-134] |
1 11 21 31 41 51
| | | | | |
1 MVMDATQSQQ PSPQSVGREF VRQYYTLLNK APNHLHRFYN HNSSYIHGES KLVVGQREIH 60
61 NRIQQLNFND CHAKISQVDA QATLGNGVVV QVTGELSNDG QPMRRFTQTF VLAAQSPKKY 120
121 YVHNDIFRYQ DLYI
|
| Detection Method: |  |
| Confidence: | 30.522879 |
| Match: | 1a2kA |
| Description: | Nuclear transport factor-2 (NTF2) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.88422211140837 | bayes_pls_golite062009 |
| protein binding | 1.34243535208605 | bayes_pls_golite062009 |
| protein transporter activity | 0.960383711156379 | bayes_pls_golite062009 |
| transporter activity | 0.55283159394909 | bayes_pls_golite062009 |
| RNA binding | 0.541310012083998 | bayes_pls_golite062009 |
| Ran GTPase binding | 0.437541267934309 | bayes_pls_golite062009 |
| small GTPase binding | 0.16703540602196 | bayes_pls_golite062009 |
| GTPase binding | 0.15019810567677 | bayes_pls_golite062009 |
|
Region A: Residues: [135-216] |
1 11 21 31 41 51
| | | | | |
1 EDEQDGESRS ENDEEHDVQV VGGTVDQAVQ VAGDVVAQQP QQQQAPPQPQ AQVVVPQQVA 60
61 PVAAGGAAPQ QIFYPLPAGA AA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [217-418] |
1 11 21 31 41 51
| | | | | |
1 GRPVAVLPPA PQAAAVPLPA QFTVPPPQPI QNGVVSHEEL QQQQVLVPPS VSPLVQQQQP 60
61 TGTPVLPIVP VPSAGFQQSP LVAPQLIQQQ QQQQPAQLPP QQQQQQQPIQ QQQPLQQQQQ 120
121 PLAEPEEVEV APRQQKPPTP VEDFKTIHEQ QQQEKYEAAK QQQNEPKTYA NLFKSTSSSP 180
181 SGFVNAALQQ QQQLQQQQQQ QQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [419-597] |
1 11 21 31 41 51
| | | | | |
1 SISSNTYNSS SATSGGGNGS QVSYSTTASS YNNSNGNSRL DNGGPLPQRN NSIRNNKGDF 60
61 EQRRSSNTQQ FGDNQQLFLG NIPHHASEDD LREIFSRFGN VLELRILSKA GNKVPPGMRS 120
121 PLNYGFITYD DPEAVQKCLA NCPLYFPENS PDGQKLNVEE KKPRVRNDMV PRQQIGGNN
|
| Detection Method: | |
| Confidence: | 33.221849 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.00411894202318 | bayes_pls_golite062009 |
| RNA binding | 2.99069397581023 | bayes_pls_golite062009 |
| nucleic acid binding | 2.31150433509655 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| mRNA binding | 0.505477067109476 | bayes_pls_golite062009 |
|
Region A: Residues: [598-690] |
1 11 21 31 41 51
| | | | | |
1 LNNNMGRLGG NNGPQSRPMG NNNGSGGGMM RNNAGGNNLR QGGGGGNGAP RLGGGGGFGQ 60
61 RQDNRTGGGN NQSNGPLRGA GNGQSGGGNY GRR
|
| Detection Method: | |
| Confidence: | 1.02 |
| Match: | 1jchA |
| Description: | Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain |
Matching Structure (courtesy of the PDB): |
|
