Protein: | rin-PE, FBpp0312... |
Organism: | Drosophila melanogaster |
Length: | 690 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rin-PE, FBpp0312....
Description | E-value | Query Range |
Subject Range |
|
244.0 | [0..1] | [675..1] |
Region A: Residues: [1-134] |
1 11 21 31 41 51 | | | | | | 1 MVMDATQSQQ PSPQSVGREF VRQYYTLLNK APNHLHRFYN HNSSYIHGES KLVVGQREIH 60 61 NRIQQLNFND CHAKISQVDA QATLGNGVVV QVTGELSNDG QPMRRFTQTF VLAAQSPKKY 120 121 YVHNDIFRYQ DLYI |
Detection Method: | |
Confidence: | 30.522879 |
Match: | 1a2kA |
Description: | Nuclear transport factor-2 (NTF2) |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
binding | 1.88422211140837 | bayes_pls_golite062009 |
protein binding | 1.34243535208605 | bayes_pls_golite062009 |
protein transporter activity | 0.960383711156379 | bayes_pls_golite062009 |
transporter activity | 0.55283159394909 | bayes_pls_golite062009 |
RNA binding | 0.541310012083998 | bayes_pls_golite062009 |
Ran GTPase binding | 0.437541267934309 | bayes_pls_golite062009 |
small GTPase binding | 0.16703540602196 | bayes_pls_golite062009 |
GTPase binding | 0.15019810567677 | bayes_pls_golite062009 |
Region A: Residues: [135-216] |
1 11 21 31 41 51 | | | | | | 1 EDEQDGESRS ENDEEHDVQV VGGTVDQAVQ VAGDVVAQQP QQQQAPPQPQ AQVVVPQQVA 60 61 PVAAGGAAPQ QIFYPLPAGA AA |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [217-418] |
1 11 21 31 41 51 | | | | | | 1 GRPVAVLPPA PQAAAVPLPA QFTVPPPQPI QNGVVSHEEL QQQQVLVPPS VSPLVQQQQP 60 61 TGTPVLPIVP VPSAGFQQSP LVAPQLIQQQ QQQQPAQLPP QQQQQQQPIQ QQQPLQQQQQ 120 121 PLAEPEEVEV APRQQKPPTP VEDFKTIHEQ QQQEKYEAAK QQQNEPKTYA NLFKSTSSSP 180 181 SGFVNAALQQ QQQLQQQQQQ QQ |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [419-597] |
1 11 21 31 41 51 | | | | | | 1 SISSNTYNSS SATSGGGNGS QVSYSTTASS YNNSNGNSRL DNGGPLPQRN NSIRNNKGDF 60 61 EQRRSSNTQQ FGDNQQLFLG NIPHHASEDD LREIFSRFGN VLELRILSKA GNKVPPGMRS 120 121 PLNYGFITYD DPEAVQKCLA NCPLYFPENS PDGQKLNVEE KKPRVRNDMV PRQQIGGNN |
Detection Method: | |
Confidence: | 33.221849 |
Match: | 1pgzA |
Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
binding | 3.00411894202318 | bayes_pls_golite062009 |
RNA binding | 2.99069397581023 | bayes_pls_golite062009 |
nucleic acid binding | 2.31150433509655 | bayes_pls_golite062009 |
protein binding | 1.12215421354121 | bayes_pls_golite062009 |
mRNA binding | 0.505477067109476 | bayes_pls_golite062009 |
Region A: Residues: [598-690] |
1 11 21 31 41 51 | | | | | | 1 LNNNMGRLGG NNGPQSRPMG NNNGSGGGMM RNNAGGNNLR QGGGGGNGAP RLGGGGGFGQ 60 61 RQDNRTGGGN NQSNGPLRGA GNGQSGGGNY GRR |
Detection Method: | |
Confidence: | 1.02 |
Match: | 1jchA |
Description: | Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain |
Matching Structure (courtesy of the PDB): |