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Protein Overview: granny-smith-PB

General Information:
Name(s) found: granny-smith-PB / FBpp0082198 [FlyBase]
Description(s) found:
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  • gi|7299691|gb|AAF54873.1| granny smith, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|6942153|gb|AAF32328.1|AF218811_1 putative cytoplasmic aminopeptidase [Drosophila melanogaster] [NCBI NR]
  • gi|21357381|ref|NP_650240.1| granny smith, isoform B [Drosophila melanogaster] [NCBI NR]
  • The gene granny smith is referred to in FlyBase by the symbol Dmel\granny-smith (CG7340, FBgn0040493). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:8775764..8793434. It has the cytological map location 87D5. Based on sequence similarity, it is predicted to have molecular function</span>: aminopeptidase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: proteolysis. 10 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • >CG7340-PB translation from_gene[CG7340 BcDNA:LD41548 FBgn0040493] seq_release:3 mol_weight=60170 cds_boundaries:(3R:8,775,940..8,787,258[-]) aa_length:558 transcript_info:[CG7340-RB seq_release:3] gene_info:[gene symbol:BcDNA:LD41548 FBgn0040493 gene_ [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9V3D8) BcDNA:LD41548 protein [DrosMelano7227.FASTAC.txt]
  • (AE003698) BcDNA:LD41548 gene product [alt 1] [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG7340-PB, isoform B [Drosophila melanogaster]gi|6942153|gb|AAF32328.1| putative cytoplasmic aminopeptidase [Drosophila melanogaster]gi|21357381|ref|NP_650240.1| CG7340-PB [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:complement(8775918..8776049,8776130..8776240,8782664..8782840,8784794..8784950,8785015..8786039,8787165..8787239); ID=FBpp0082198; name=granny-smith-PB; parent=FBgn0040493,FBtr0082730; dbxref=FlyBase:FBpp0082198,FlyBase_Annotation_IDs [fly-100309-contam.fasta]
  • CG7340-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • granny smith CG7340-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • putative cytoplasmic aminopeptidase [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:complement(8775918..8776049,8776130..8776240,8782664..8782840,8784794..8784950,8785015..8786039,8787165..8787239); ID=FBpp0082198; name=granny-smith-PB; parent=FBgn0040493,FBtr0082730; dbxref=FlyBase:FBpp0082198,FlyBase_Annotation_IDs:CG7340-PB,GB_protein:AAF54873.1,REFSEQ:NP_650240,GB_protein:AAF54873; MD5=bcd92e987b3438345b31ec540313f2ed; length=558; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:complement(8775918..8776049,8776130..8776240,8782664..8782840,8784794..8784950,8785015..8786039,8787165..8787239); ID=FBpp0082198; name=granny-smith-PB; parent=FBgn0040493,FBtr0082730; dbxref=FlyBase:FBpp0082198,FlyBase_Annotation_IDs:CG7340-PB,GB_protein:AAF54873.1,REFSEQ:NP_650240,GB_protein:AAF54873; MD5=bcd92e987b3438345b31ec540313f2ed; length=558; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • GH27579p OS=Drosophila melanogaster GN=granny-smith PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:complement(8775918..8776049,8776130..8776240,8782664..8782840,8784794..8784950,8785015..8786039,8787165..8787239); ID=FBpp0082198; name=grsm-PB; parent=FBgn0040493,FBtr0082730; dbxref=FlyBase:FBpp0082198,FlyBase_Annotation_IDs:CG7340-PB,GB_protein:AAF54873.1,REFSEQ:NP_650240,GB_protein:AAF54873,FlyMine:FBpp0082198,modMine:FBpp0082198; MD5=bcd92e987b3438345b31ec540313f2ed; length=558; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • GH27579p OS=Drosophila melanogaster GN=grsm PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=3R:complement(join(12961443..12961517,12959293..12960317,12959072..12959228,12956942..12957118,12950408..12950518,12950196..12950327)); ID=FBpp0082198; name=grsm-PB; parent=FBgn0040493,FBtr0082730; dbxref=FlyBase:FBpp0082198,FlyBase_Annotation_IDs:CG7340-PB,GB_protein:AAF54873.1,REFSEQ:NP_650240,GB_protein:AAF54873,FlyMine:FBpp0082198,modMine:FBpp0082198; MD5=bcd92e987b3438345b31ec540313f2ed; length=558; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:complement(join(12961443..12961517,12959293..12960317,12959072..12959228,12956942..12957118,12950408..12950518,12950196..12950327)); ID=FBpp0082198; name=grsm-PB; parent=FBgn0040493,FBtr0082730; dbxref=FlyBase:FBpp0082198,FlyBase_Annotation_IDs:CG7340-PB,GB_protein:AAF54873.1,REFSEQ:NP_650240,GB_protein:AAF54873,FlyMine:FBpp0082198,modMine:FBpp0082198; MD5=bcd92e987b3438345b31ec540313f2ed; length=558; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of A0A0C4FEI8, GH27579p OS=Drosophila melanogaster GN=grsm PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0082198 type=protein; loc=3R:complement(join(12961443..12961517,12959293..12960317,12959072..12959228,12956942..12957118,12950408..12950518,12950196..12950327)); ID=FBpp0082198; name=grsm-PB; parent=FBgn0040493,FBtr0082730; dbxref=FlyBase:FBpp0082198,FlyBase_Annotation_IDs:CG7340-PB,GB_protein:AAF54873.1,REFSEQ:NP_650240,GB_protein:AAF54873,FlyMine:FBpp0082198,modMine:FBpp0082198; MD5=bcd92e987b3438345b31ec540313f2ed; length=558; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:complement(join(12961443..12961517,12959293..12960317,12959072..12959228,12956942..12957118,12950408..12950518,12950196..12950327)); ID=FBpp0082198; name=grsm-PB; parent=FBgn0040493,FBtr0082730; dbxref=FlyBase:FBpp0082198,FlyBase_Annotation_IDs:CG7340-PB,GB_protein:AAF54873.1,REFSEQ:NP_650240,GB_protein:AAF54873,UniProt/TrEMBL:Q9V3D8,FlyMine:FBpp0082198,modMine:FBpp0082198; MD5=bcd92e987b3438345b31ec540313f2ed; length=558; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 558 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [ISS]
    intracellular [IEA]
    Biological Process: proteolysis [IEA]
    Molecular Function: aminopeptidase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLLCVQAI RNHLARTYSS ARFKKMATDV KFNESLGCSD PQTHPVLIIG QLRHLNLLKF  60
   61 SHLESKLSPR VTEETFLNAV ACLHPAPTDK VSLYLDVATV AALPLKASRH NTASRAHAIT 120
  121 RLVKNHVLNV SEESVVLVCE RENLFASACA VVRAFPLYSR KTGNLLASSQ PKLNLGCGDG 180
  181 NANSGRNVVN VEFVLINKDG CIESEPLTDD ELNCLNETTR AIRMTARIVD MPCNEMNVDH 240
  241 FIQEVEDVGR ELCITPKVIR GEELLEQGFG GIYGVGKAAA VPPALVVLSH EPKGAQETIA 300
  301 LVGKGIVYDT GGLSIKAKTG MPGMKRDCGG AAAILGTFYA AVQCGFRDNL HAVFCLAENS 360
  361 VGPNATRPDD IHTLYSGRTV EINNTDAEGR LVLADGVCYA NKDLKANIIL DMATLTGAQG 420
  421 VATGKYHGAI LTNSETWEAK SLQAGRKSGD LLAPIIYCPE LHFSEFASAI ADMKNSVADR 480
  481 QNAQSSCAGL FIAAHLGFDY PGIWMHVDMA TPVHCGERAT GYGVSLLLTL FGGHTDSKLL 540
  541 QSIASTDEEP PSKRWCRD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..558] PSI-BLAST 105.0 No description for 2hb6A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle