YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CG3162-PA

General Information:
Name(s) found: CG3162-PA / FBpp0071961 [FlyBase]
Description(s) found:
SHOW ONLY BEST
  • gi|7291545|gb|AAF46969.1| CG3162 [Drosophila melanogaster] [NCBI NR]
  • gi|24659166|ref|NP_611769.2| CG3162 [Drosophila melanogaster] [NCBI NR]
  • gi|201066057|gb|ACH92438.1| FI08027p [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG3162 (CG3162, FBgn0034834). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:19097648..19099062. It has the cytological map location 59D2. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: nuclear mRNA splicing, via spliceosome. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG3162-PA translation from_gene[CG3162 CG3162 FBgn0034834] seq_release:3 mol_weight=50627 cds_boundaries:(2R:18,253,720..18,255,066[-]) aa_length:449 transcript_info:[CG3162-RA seq_release:3] gene_info:[gene symbol:CG3162 FBgn0034834 gene_boundaries:( [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9W1T4) CG3162 protein [DrosMelano7227.FASTAC.txt]
  • (AE003460) CG3162 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG3162-PA [Drosophila melanogaster]gi|24659166|ref|NP_611769.2| CG3162-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(19097672..19099021); ID=FBpp0071961; name=CG3162-PA; parent=FBgn0034834,FBtr0072052; dbxref=FlyBase:FBpp0071961,FlyBase_Annotation_IDs:CG3162-PA,GB_protein:AAF46969.1,REFSEQ:NP_611769,GB_protein:AAF46969; MD5=03bed89217c69e [fly-100309-contam.fasta]
  • CG3162-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(19097672..19099021); ID=FBpp0071961; name=CG3162-PA; parent=FBgn0034834,FBtr0072052; dbxref=FlyBase:FBpp0071961,FlyBase_Annotation_IDs:CG3162-PA,GB_protein:AAF46969.1,REFSEQ:NP_611769,GB_protein:AAF46969; MD5=03bed89217c69e6100d5f9a48973bb29; length=449; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(19097672..19099021); ID=FBpp0071961; name=CG3162-PA; parent=FBgn0034834,FBtr0072052; dbxref=FlyBase:FBpp0071961,FlyBase_Annotation_IDs:CG3162-PA,GB_protein:AAF46969.1,REFSEQ:NP_611769,GB_protein:AAF46969; MD5=03bed89217c69e6100d5f9a48973bb29; length=449; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG3162 OS=Drosophila melanogaster GN=CG3162 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(19097672..19099021); ID=FBpp0071961; name=LS2-PA; parent=FBgn0034834,FBtr0072052; dbxref=FlyBase:FBpp0071961,FlyBase_Annotation_IDs:CG3162-PA,GB_protein:AAF46969.1,REFSEQ:NP_611769,GB_protein:AAF46969,FlyMine:FBpp0071961,modMine:FBpp0071961; MD5=03bed89217c69e6100d5f9a48973bb29; length=449; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • CG3162 OS=Drosophila melanogaster GN=LS2 PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=2R:complement(23210149..23211498); ID=FBpp0071961; name=LS2-PA; parent=FBgn0034834,FBtr0072052; dbxref=FlyBase:FBpp0071961,FlyBase_Annotation_IDs:CG3162-PA,GB_protein:AAF46969.1,REFSEQ:NP_611769,GB_protein:AAF46969,FlyMine:FBpp0071961,modMine:FBpp0071961; MD5=03bed89217c69e6100d5f9a48973bb29; length=449; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(23210149..23211498); ID=FBpp0071961; name=LS2-PA; parent=FBgn0034834,FBtr0072052; dbxref=FlyBase:FBpp0071961,FlyBase_Annotation_IDs:CG3162-PA,GB_protein:AAF46969.1,REFSEQ:NP_611769,GB_protein:AAF46969,FlyMine:FBpp0071961,modMine:FBpp0071961; MD5=03bed89217c69e6100d5f9a48973bb29; length=449; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FI08027p OS=Drosophila melanogaster GN=LS2 PE=2 SV=1 [DROME.fasta.20160308]
  • FBpp0071961 type=protein; loc=2R:complement(23210149..23211498); ID=FBpp0071961; name=LS2-PA; parent=FBgn0034834,FBtr0072052; dbxref=FlyBase:FBpp0071961,FlyBase_Annotation_IDs:CG3162-PA,GB_protein:AAF46969.1,REFSEQ:NP_611769,GB_protein:AAF46969,FlyMine:FBpp0071961,modMine:FBpp0071961; MD5=03bed89217c69e6100d5f9a48973bb29; length=449; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(23210149..23211498); ID=FBpp0071961; name=LS2-PA; parent=FBgn0034834,FBtr0072052; dbxref=FlyBase:FBpp0071961,FlyBase_Annotation_IDs:CG3162-PA,GB_protein:AAF46969.1,REFSEQ:NP_611769,GB_protein:AAF46969,UniProt/TrEMBL:Q9W1T4,FlyMine:FBpp0071961,modMine:FBpp0071961; MD5=03bed89217c69e6100d5f9a48973bb29; length=449; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 449 amino acids

    Gene Ontology:
    Cellular Component: U2 snRNP [ISS]
    Biological Process: nuclear mRNA splicing, via spliceosome [ISS]
    Molecular Function: nucleotide binding [IEA]
    RNA binding [IEA]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRFRPMNRS WNALRSRSRS RSRSRSPFRS QSITRSRPTR SDTIYTERTR LQRRFSRPPS  60
   61 SWDIPPEGYN HLTPQQYKAM LASGQIASRI LSDGVHGGES AAISMITRQA RRLYVGNIPF 120
  121 GVTDEEMMQF FNHQIMALGF EAKSSHYMDG NAVLTCQTNL EKNFAFLEFR SIDEASQALN 180
  181 FDGMVFRGQT LKIRRPHDYQ PVPSISVSAM ESYRSFRVPA INVAQQPAVT LPVTTIVPDS 240
  241 PNKIYVGGLP TCLNQDQVKE LLQSFGELKG LNLVMDTNTN LNKGFAFFEY CDPSVTDHAI 300
  301 AGLHGMLLGD RRLVVQRSIP GGKNAFPGHL PTVLQVPGIS TLQDPGSPTE TLCLLNMVRP 360
  361 EELLDDEEFE DIRTDIKQEC AKFGEVRSIK IPRPIGQFPK RGCGKVFVQF ESVEDSQKAL 420
  421 KALSGRKFSG RIVMTSYYDP EKYLADDLQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..104] deduced N/A No confident structure predictions are available.
    2 View Details [105..238] PSI-BLAST 11.30103 Splicing factor U2AF 65 KDa subunit
    3 View Details [239..326] PSI-BLAST 16.69897 Splicing factor U2AF 65 KDa subunit
    4 View Details [327..449] PSI-BLAST 13.221849 Splicing factor U2AF 65 KDa subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA binding
    		•  6.73097473547076 bayes_pls_golite062009
    		• 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
    		•  5.29759606920196 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.92126426323641 bayes_pls_golite062009
  • snRNA binding
    		•  4.06596327298973 bayes_pls_golite062009
  • binding
    		•  3.64400841800969 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  3.11990160533699 bayes_pls_golite062009
  • U1 snRNA binding
    		•  3.02511982045347 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.93798024346416 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.92450390013691 bayes_pls_golite062009
  • DNA binding
    		•  1.8021593476478 bayes_pls_golite062009
  • structural molecule activity
    		•  1.29928829870122 bayes_pls_golite062009
  • transcription factor activity
    		•  1.15127506309683 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.591700155096213 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.425042944899091 bayes_pls_golite062009
  • transporter activity
    		•  0.417047632648771 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.383589644462932 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.288834004308736 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.288804044686487 bayes_pls_golite062009
  • snoRNA binding
    		•  0.0568636182001701 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.00171911393626201 bayes_pls_golite062009
    3
    Term Confidence Notes
  • RNA binding
    		•  6.73097473547076 bayes_pls_golite062009
    		• 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
    		•  5.29759606920196 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.92126426323641 bayes_pls_golite062009
  • snRNA binding
    		•  4.06596327298973 bayes_pls_golite062009
  • binding
    		•  3.64400841800969 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  3.11990160533699 bayes_pls_golite062009
  • U1 snRNA binding
    		•  3.02511982045347 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.93798024346416 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.92450390013691 bayes_pls_golite062009
  • DNA binding
    		•  1.8021593476478 bayes_pls_golite062009
  • structural molecule activity
    		•  1.29928829870122 bayes_pls_golite062009
  • transcription factor activity
    		•  1.15127506309683 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.591700155096213 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.425042944899091 bayes_pls_golite062009
  • transporter activity
    		•  0.417047632648771 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.383589644462932 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.288834004308736 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.288804044686487 bayes_pls_golite062009
  • snoRNA binding
    		•  0.0568636182001701 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.00171911393626201 bayes_pls_golite062009
    4
    Term Confidence Notes
  • RNA binding
    		•  6.73097473547076 bayes_pls_golite062009
    		• 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
    		•  5.29759606920196 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.92126426323641 bayes_pls_golite062009
  • snRNA binding
    		•  4.06596327298973 bayes_pls_golite062009
  • binding
    		•  3.64400841800969 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  3.11990160533699 bayes_pls_golite062009
  • U1 snRNA binding
    		•  3.02511982045347 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.93798024346416 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.92450390013691 bayes_pls_golite062009
  • DNA binding
    		•  1.8021593476478 bayes_pls_golite062009
  • structural molecule activity
    		•  1.29928829870122 bayes_pls_golite062009
  • transcription factor activity
    		•  1.15127506309683 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.591700155096213 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.425042944899091 bayes_pls_golite062009
  • transporter activity
    		•  0.417047632648771 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.383589644462932 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.288834004308736 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.288804044686487 bayes_pls_golite062009
  • snoRNA binding
    		•  0.0568636182001701 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.00171911393626201 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle