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Protein Overview: FBpp0292041, FBp...

General Information:
Name(s) found: FBpp0297362 [FlyBase]
FBpp0292041 [FlyBase]
SC35-PB / FBpp0088838 [FlyBase]
Description(s) found:
Found 36 descriptions.
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  • type=protein; loc=2L:complement(12432345..12432723,12433579..12433709,12433835..12433912); ID=FBpp0297362; name=SC35-PD; parent=FBgn0265298,FBtr0306252; dbxref=REFSEQ:NP_001246005,GB_protein:AFH03679,FlyBase:FBpp0297362,FlyBase_Annotation_IDs:CG5442-PD; MD5=44e12dbc23a287e6df54ea88777b1e4d; length=195; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=2L:complement(12432345..12432723,12433579..12433709,12433835..12433912); ID=FBpp0292041; name=SC35-PC; parent=FBgn0265298,FBtr0302910; dbxref=FlyBase:FBpp0292041,FlyBase_Annotation_IDs:CG5442-PC,REFSEQ:NP_001188794,GB_protein:ADV37044; MD5=44e12dbc23a287e6df54ea88777b1e4d; length=195; release=r5.56; species=Dmel; [FlyBase]
  • The gene SC35 is referred to in FlyBase by the symbol Dmel\SC35 (CG5442, FBgn0040286). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:12431856..12434665. It has the cytological map location 33E4. There is experimental evidence that it has the molecular function</span>: protein binding. There is experimental evidence that it is involved in the biological process</span>: regulation of alternative nuclear mRNA splicing, via spliceosome. 7 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 195 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IC][IDA]
    [NOT]omega speckle [IDA]
    nuclear speck [IDA]
    spliceosomal complex [NAS]
    chromatin [IDA]
    Biological Process: regulation of alternative nuclear mRNA splicing, via spliceosome [IMP]
    mRNA splice site selection [ISS]
    nuclear mRNA splicing, via spliceosome [ISS][NAS]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    protein binding [IPI]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNGGGAGGL GAARPPPRID GMVSLKVDNL TYRTTPEDLR RVFERCGEVG DIYIPRDRYT  60
   61 RESRGFAFVR FYDKRDAEDA LEAMDGRMLD GRELRVQMAR YGRPSSPTRS SSGRRGGGGG 120
  121 GGSGGRRRSR SRSPMRRRSR SPRRRSYSRS RSPGSHSPER RSKFSRSPVR GDSRNGIGSG 180
  181 SGGLAPAASR SRSRS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..112] PSI-BLAST 12.39794 No description for 2dnmA was found.
    2 View Details [113..195] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle