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Protein Overview: NFYB_RAT

General Information:
Name(s) found: NFYB_RAT [Swiss-Prot]
Description(s) found:
Found 23 descriptions.
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  • Nuclear transcription factor Y subunit beta OS=Rattus norvegicus GN=Nfyb PE=1 SV=1 [Swiss-Prot]
    • Organism: Rattus norvegicus
    Length: 207 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN][IEA]
    CCAAT-binding factor complex [UNKNOWN][IEA]
    intracellular [IEA]
    Biological Process: positive regulation of transcription, DNA-dependent [UNKNOWN][IEA]
    regulation of transcription, DNA-dependent [UNKNOWN][IEA]
    Molecular Function: DNA binding [UNKNOWN]
    transcription factor activity [UNKNOWN][IEA]
    protein binding [UNKNOWN][IEA]
    transcription repressor binding [UNKNOWN]
    sequence-specific DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMDGDSSTT DASQLGISAD YIGGSHYVIQ PHDDTEDSMN DHEDTNGSKE SFREQDIYLP  60
   61 IANVARIMKN AIPQTGKIAK DAKECVQECV SEFISFITSE ASERCHQEKR KTINGEDILF 120
  121 AMSTLGFDSY VEPLKLYLQK FREAMKGEKG IGGAVSATDG LSEELTEEAF TNQLPAGLIT 180
  181 ADGQQQNVMV YTTSYQQISG VQQIQFS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..207] PSI-BLAST 33.69897 Nuclear transcription factor Y subunit beta (Nf-Yb3)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA binding
    		•  4.49118409263799 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.35201412176948 bayes_pls_golite062009
  • transcription regulator activity
    		•  4.08606081850613 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  4.04353148658823 bayes_pls_golite062009
  • binding
    		•  3.27510691458843 bayes_pls_golite062009
  • transcription activator activity
    		•  2.58408368884371 bayes_pls_golite062009
  • transcription factor activity
    		•  2.51581622888695 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.38228606466152 bayes_pls_golite062009
  • protein binding
    		•  2.1291876005999 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.18653213156155 bayes_pls_golite062009
  • transcription factor binding
    		•  1.15204005455906 bayes_pls_golite062009
  • transcription coactivator activity
    		•  1.1297723528047 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.01502031330902 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.72554769377984 bayes_pls_golite062009
  • transcription initiation factor activity
    		•  0.0945459819298291 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.0736756545988504 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle