General Information: |
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Name(s) found: |
SMCA4_RAT
[Swiss-Prot]
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Description(s) found:
SHOW ONLY BEST |
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Organism: | Rattus norvegicus |
Length: | 1613 amino acids |
Gene Ontology: |
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Cellular Component: |
heterochromatin
[UNKNOWN]
nucleus [UNKNOWN][IDA] SWI/SNF complex [UNKNOWN][IDA] soluble fraction [IDA] perichromatin fibrils [UNKNOWN] npBAF complex [ISS] nuclear euchromatin [UNKNOWN] nBAF complex [ISS] [NOT]nucleolus [UNKNOWN] |
Biological Process: |
chromatin modification
[IEA]
nervous system development [IEA] vasculogenesis [UNKNOWN] glial cell fate determination [UNKNOWN] regulation of transcription [IEA] positive regulation of transcription from RNA polymerase II promoter [UNKNOWN] positive regulation of transcription factor activity [UNKNOWN] nucleosome disassembly [IDA] heart trabecula formation [UNKNOWN] methylation-dependent chromatin silencing [UNKNOWN] negative regulation of transcription from RNA polymerase II promoter [UNKNOWN] heart development [UNKNOWN] keratinocyte differentiation [UNKNOWN] chromatin remodeling [UNKNOWN] forebrain development [UNKNOWN] blastocyst growth [UNKNOWN] hindbrain development [UNKNOWN] epidermis morphogenesis [UNKNOWN] ATP-dependent chromatin remodeling [IDA] blastocyst hatching [UNKNOWN] extracellular matrix organization [UNKNOWN] positive regulation of gene-specific transcription from RNA polymerase II promoter [UNKNOWN] embryonic hindlimb morphogenesis [UNKNOWN] |
Molecular Function: |
DNA-dependent ATPase activity
[UNKNOWN]
identical protein binding [UNKNOWN] hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [IEA] helicase activity [IEA] chromatin binding [UNKNOWN] transcription factor binding [UNKNOWN] nucleotide binding [IEA] DNA binding [IEA] ATP binding [IEA] p53 binding [UNKNOWN] protein binding [UNKNOWN][IC][IPI] protein N-terminus binding [UNKNOWN] histone acetyl-lysine binding [UNKNOWN] transcription activator activity [UNKNOWN] hydrolase activity [IEA] |
Sequence: |
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Sequence: [PDR BLAST] [ProtParam] |
1 11 21 31 41 51 | | | | | | 1 MSTPDPPLGG TPRPGPSPGP GPSPGAMLGP SPGPSPGSAH SMMGPSPGPP SAGHPMPTQG 60 61 PGGYPQDNMH QMHKPMESMH EKGMPDDPRY NQMKGMGMRS GAHTGMGPPP SPMDQHSQGY 120 121 PSPLGGSEHA SSPVPASGPS SGPQMSSGPG GAPLDGSDPQ ALGQQNRGPT PFNQNQLHQL 180 181 RAQIMAYKML ARGQPLPDHL QMAVQGKRPM PGMQQQMPTL PPPSVSATGP GPGPGPGPGP 240 241 GPGPAPPNYS RPHGMGGPNM PPPGPSGVPP GMPGQPPGGP PKPWPEGPMA NAAAPTSTPQ 300 301 KLIPPQPTGR PSPAPPAVPP AASPVMPPQT QSPGQPAQPA PLVPLHQKQS RITPIQKPRG 360 361 LDPVEILQER EYRLQARIVH RIQELENLPG SLAGDLRTKA TIELKALRLL NFQRQLRQEV 420 421 VVCMRRDTAL ETALNAKAYK RSKRQSLREA RITEKLEKQQ KIEQERKRRQ KHQEYLNSIL 480 481 QHAKDFREYH RSVTGKLQKL TKAVATYHAN TEREQKKENE RIEKERMRRL MAEDEEGYRK 540 541 LIDQKKDKRL AYLLQQTDEY VANLTELVRQ HKAAQVAKEK KKKKKKKKAE NAEGQTPAIG 600 601 PDGEPLDETS QMSDLPVKVI HVESGKILTG TDAPKAGQLE AWLEMNPGYE VAPRSDSEES 660 661 GSEEEEEEEE EEQPQPAQPP TLPVEEKKKI PDPDSDDVSE VDARHIIENA KQDVDDEYGV 720 721 SQALARGLQS YYAVAHAVTE RVDKQSALMV NGVLKQYQIK GLEWLVSLYN NNLNGILADE 780 781 MGLGKTIQTI ALITYLMEHK RINGPFLIIV PLSTLSNWAY EFDKWAPSVV KVSYKGSPAA 840 841 RRAFVPQLRS GKFNVLLTTY EYIIKDKHIL AKIRWKYMIV DEGHRMKNHH CKLTQVLNTH 900 901 YVAPRRLLLT GTPLQNKLPE LWALLNFLLP TIFKSCSTFE QWFNAPFAMT GEKVDLNEEE 960 961 TILIIRRLHK VLRPFLLRRL KKEVEAQLPE KVEYVIKCDM SALQRVLYRH MQAKGVLLTD1020 1021 GSEKDKKGKG GTKTLMNTIM QLRKICNHPY MFQHIEESFS EHLGFTGGIV QGLDLYRASG1080 1081 KFELLDRILP KLRATNHKVL LFCQMTSLMT IMEDYFAYRG FKYLRLDGTT KAEDRGMLLK1140 1141 TFNEPGSEYF IFLLSTRAGG LGLNLQSADT VIIFDSDWNP HQDLQAQDRA HRIGQQNEVR1200 1201 VLRLCTVNSV EEKILAAAKY KLNVDQKVIQ AGMFDQKSSS HERRAFLQAI LEHEEQDEEE1260 1261 DEVPDDETVN QMIARHEEEF DLFMRMDLDR RREEARNPKR KPRLMEEDEL PSWIIKDDAE1320 1321 VERLTCEEEE EKMFGRGSRH RKEVDYSDSL TEKQWLKAIE EGTLEEIEEE VRQKKSSRKR1380 1381 KRDSEAGSST PTTSTRSRDK DEESKKQKKR GRPPAEKLSP NPPNLTKKMK KIVDAVIKYK1440 1441 DSSGRQLSEV FIQLPSRKEL PEYYELIRKP VDFKKIKERI RNHKYRSLND LEKDVMLLCQ1500 1501 NAQTFNLEGS LIYEDSIVLQ SVFTSVRQKI EKEDDSEGEE SEEEEEGEEE GSESESRSVK1560 1561 VKIKLGRKEK AQDRLKGGRR RPSRGSRAKP VVSDDDSDEE QEEDRSGSGS EED |
NOT SHOWING SINGLE HITS. [ Show Single Hits ]
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Protein predicted to be: | GLOBULAR (No transmembrane regions or signal peptide) |
Confidence of classification: | 0.99 |
Source: Reynolds et al. (2008)