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Protein Overview: gi|119352249

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..190] PSI-BLAST 59.045757 Poly(A)-binding protein
2 View Details [191..338] PSI-BLAST 5.39794 NMR Structure of RRM2 from Human Polypyrimidine Tract Binding Protein Isoform 1 (PTB1)
3 View Details [339..439] deduced N/A No confident structure predictions are available.
4 View Details [440..525] PSI-BLAST 23.0 No description for 2d9pA was found.
5 View Details [526..617] deduced N/A No confident structure predictions are available.
6 View Details [618..746] PSI-BLAST 6.69897 Sec24
7 View Details [747..875] PSI-BLAST 35.0 poly(A) binding protein

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • RNA binding
  • 5.15097136329571 bayes_pls_golite062009
  • nucleic acid binding
  • 4.92126426323641 bayes_pls_golite062009
  • mRNA binding
  • 4.05281507540116 bayes_pls_golite062009
  • binding
  • 3.64400841800969 bayes_pls_golite062009
  • 2.24263873726102 bayes_pls_golite062009
  • transcription regulator activity
  • 2.18211199677674 bayes_pls_golite062009
  • DNA binding
  • 1.98418556946403 bayes_pls_golite062009
  • single-stranded RNA binding
  • 1.46469774223879 bayes_pls_golite062009
  • protein binding
  • 1.12215421354121 bayes_pls_golite062009
  • transcription factor activity
  • 1.07843408116687 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 1.04854882388951 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.824614388276642 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.383589644462932 bayes_pls_golite062009
    2
    Term Confidence Notes
  • RNA binding
  • 5.15097136329571 bayes_pls_golite062009
  • nucleic acid binding
  • 4.92126426323641 bayes_pls_golite062009
  • mRNA binding
  • 4.05281507540116 bayes_pls_golite062009
  • binding
  • 3.64400841800969 bayes_pls_golite062009
  • 2.24263873726102 bayes_pls_golite062009
  • transcription regulator activity
  • 2.18211199677674 bayes_pls_golite062009
  • DNA binding
  • 1.98418556946403 bayes_pls_golite062009
  • single-stranded RNA binding
  • 1.46469774223879 bayes_pls_golite062009
  • protein binding
  • 1.12215421354121 bayes_pls_golite062009
  • transcription factor activity
  • 1.07843408116687 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 1.04854882388951 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.824614388276642 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.383589644462932 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.
    7
    Term Confidence Notes
  • RNA binding
  • 4.11788426448287 bayes_pls_golite062009
  • mRNA binding
  • 4.06818972936809 bayes_pls_golite062009
  • nucleic acid binding
  • 3.78909647605682 bayes_pls_golite062009
  • eukaryotic initiation factor 4G binding
  • 3.4111148675327 bayes_pls_golite062009
  • single-stranded RNA binding
  • 3.03728178586535 bayes_pls_golite062009
  • binding
  • 2.76167454154417 bayes_pls_golite062009
  • poly(A) RNA binding
  • 2.66269581586161 bayes_pls_golite062009
  • poly-purine tract binding
  • 2.60937924017999 bayes_pls_golite062009
  • protein binding
  • 0.856075580719879 bayes_pls_golite062009
  • catalytic activity
  • 0.287695754348243 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle