YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: HXC8_RAT

General Information:
Name(s) found: HXC8_RAT [Swiss-Prot]
Description(s) found:
Found 7 descriptions.
SHOW ALL
  • Homeobox protein Hox-C8 (Fragment) OS=Rattus norvegicus GN=Hoxc8 PE=2 SV=2 [Swiss-Prot]
    • Organism: Rattus norvegicus
    Length: 108 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: multicellular organismal development [IEA]
    anterior/posterior pattern formation [UNKNOWN]
    regulation of transcription, DNA-dependent [IEA]
    embryonic skeletal system development [UNKNOWN]
    embryonic skeletal system morphogenesis [UNKNOWN]
    Molecular Function: transcription factor activity [IEA]
    protein binding [UNKNOWN]
    sequence-specific DNA binding [IEA]
    transcription activator activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RHNQTGVLFC SAPGRRSGRQ TYSRYQTLEL EKEFLFNPYL TRKRRIEVSH ALGLTERQVK  60
   61 IWFQNRRMKW KKENNKDKLP GARDEEKVEE EGNEEEEKEE EEKEENKD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..108] PSI-BLAST 18.69897 Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle