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Protein Overview: RS10_RAT

General Information:
Name(s) found: RS10_RAT [Swiss-Prot]
Description(s) found:
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  • pir||R3RT10 ribosomal protein S10, cytosolic [validated] - rat [NCBI NR]
  • gi|57127|emb|CAA31901.1| unnamed protein product [Rattus norvegicus] [NCBI NR]
  • gi|54039307|sp|P63326.1|RS10_RAT RecName: Full=40S ribosomal protein S10 [NCBI NR]
  • gi|37194697|gb|AAH58141.1| Ribosomal protein S10 [Rattus norvegicus] [NCBI NR]
  • gi|149043443|gb|EDL96894.1| rCG60609 [Rattus norvegicus] [NCBI NR]
  • gi|13592069|ref|NP_112371.1| ribosomal protein S10 [Rattus norvegicus] [NCBI NR]
  • 40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):6-67587874;6-69342643 40S ribosomal protein S10 [hmr_yeast5_DM3-1_pombe.fasta]
  • ribosomal protein S10 [HMR_022704-rand.fasta]
  • Unknown (protein for MGC:98089) [Xenopus laevis]gi|13399310|ref|NP_080239.1| ribosomal protein S10 [Mus musculus]gi|13592069|ref|NP_112371.1| ribosomal protein S10 [Rattus norvegicus]gi|37194697|gb|AAH58141.1| Ribosomal protein S10 [Rattus norvegicus] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10116 40S ribosomal protein S10 [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta]
  • (NM_031109) ribosomal protein S10 [Rattus norvegicus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • Tax_Id=10116 Ensembl_locations(Chr-bp):6-67587874;6-69342643 40S ribosomal protein S10 [EBI-IPI_Drosophila_na_12-13-2007_con_reversed.fasta]
  • 40S ribosomal protein S10 [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • ribosomal protein S10 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • rCG60609 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Ribosomal protein S10 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • unnamed protein product [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 40S RIBOSOMAL PROTEIN S10 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10116 Gene_Symbol=Rps10 40S ribosomal protein S10 [rat-ipi-250309-contam.fasta]
  • 40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 [011711_HMR.fasta]
    • Organism: Rattus norvegicus
    Length: 165 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEA]
    cytosolic small ribosomal subunit [UNKNOWN][IDA]
    cytosol [UNKNOWN]
    ribosome [IEA]
    Biological Process: ribosomal small subunit assembly [IMP]
    translational elongation [UNKNOWN]
    Molecular Function: protein binding [UNKNOWN]
    structural constituent of ribosome [IMP]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMPKKNRIA IYELLFKEGV MVAKKDVHMP KHPELADKNV PNLHVMKAMQ SLKSRGYVKE  60
   61 QFAWRHFYWY LTNEGIQYLR DYLHLPPEIV PATLRRSRPE TGRPRPKGPE GERPARFTRG 120
  121 EADRDTYRRS AVPPGADKKA EAGAGSATEF QFRGGFGRGR GQPPQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..165] FFAS03 0.955 Structure of the transcriptional regulator homologue protein from Pyrococcus horikoshii OT3

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  5.31568733625259 bayes_pls_golite062009
  • structural molecule activity
    		•  5.08906334129014 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.15604421023994 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.03746013592931 bayes_pls_golite062009
  • DNA binding
    		•  2.94000725003786 bayes_pls_golite062009
  • binding
    		•  2.7993872466812 bayes_pls_golite062009
  • transcription factor activity
    		•  2.26980753972323 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.948991080726164 bayes_pls_golite062009
  • protein binding
    		•  0.933833716716586 bayes_pls_golite062009
  • transcription activator activity
    		•  0.818477312720578 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.679859821399589 bayes_pls_golite062009
  • RNA binding
    		•  0.352569950847387 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.205052011867554 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle