Protein Overview: SMBP2_RAT

General Information:
Name(s) found:	SMBP2_RAT [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|81917357\|sp\|Q9EQN5.1\|SMBP2_RAT RecName: Full=DNA-binding protein SMUBP-2; AltName: Full=ATP-dependent helicase IGHMBP2; AltName: Full=Antifreeze enhancer-binding protein ortholog; Short=AEP [NCBI NR] gi\|13928794\|ref\|NP_113774.1\| immunoglobulin mu binding protein 2 [Rattus norvegicus] [NCBI NR] gi\|11066349\|gb\|AAG28561.1\|AF199411_1 antifreeze-enhancer binding protein AEP [Rattus norvegicus] [NCBI NR] DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1 SV=1 [Swiss-Prot] Ensembl_locations(Chr-bp):1-205337764 Antifreeze-enhancer binding protein AEP [hmr_yeast5_DM3-1_pombe.fasta] immunoglobulin mu binding protein 2; immunoglobulin S mu binding protein 2; antifreeze enhancer-binding protein [HMR_022704-rand.fasta] immunoglobulin mu binding protein 2 [Rattus norvegicus]gi\|11066349\|gb\|AAG28561.1\| antifreeze-enhancer binding protein AEP [Rattus norvegicus] [nrdb_11152004_Chlamydomonas] Tax_Id=10116 Antifreeze-enhancer binding protein AEP [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta] (NM_031586) immunoglobulin mu binding protein 2; immunoglobulin S mu binding protein 2 [Rattus norvegicus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta] immunoglobulin mu binding protein 2 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] antifreeze-enhancer binding protein AEP [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] Tax_Id=10116 ANTIFREEZE-ENHANCER BINDING PROTEIN AEP [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta] Tax_Id=10116 Gene_Symbol=Ighmbp2 Antifreeze-enhancer binding protein AEP [rat-ipi-250309-contam.fasta] DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 [011711_HMR.fasta]
Organism:	Rattus norvegicus
Length:	988 amino acids
Gene Ontology:
Cellular Component:	growth cone [IEA] nucleus [UNKNOWN][ISS] perinuclear region of cytoplasm [IEA] ribonucleoprotein complex [IEA] cytoplasm [UNKNOWN][ISS] neuronal cell body [UNKNOWN][IEA] cell projection [IEA] axon [IEA] SMN complex [UNKNOWN][IEA]
Biological Process:	negative regulation of transcription from RNA polymerase II promoter [IDA] spinal cord motor neuron differentiation [UNKNOWN][IEA] protein homooligomerization [UNKNOWN][IEA] regulation of transcription [IEA]
Molecular Function:	DNA-dependent ATPase activity [UNKNOWN][ISS] zinc ion binding [IEA] RNA-dependent ATPase activity [UNKNOWN][ISS] helicase activity [IEA] transcription factor binding [UNKNOWN][IEA] tRNA binding [UNKNOWN][ISS] protein self-association [ISS] nucleotide binding [IEA] DNA binding [UNKNOWN][IDA][IEA] ATP binding [UNKNOWN][IEA][ISS] RNA binding [UNKNOWN][ISS] protein binding [UNKNOWN] RNA polymerase II transcription factor activity [IDA] ATP-dependent 5'-3' DNA helicase activity [UNKNOWN][ISS] metal ion binding [IEA] ribosome binding [UNKNOWN][ISS] ATP-dependent 5'-3' RNA helicase activity [UNKNOWN][ISS] nucleoside-triphosphatase activity [IEA] hydrolase activity [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASYTVESFV AQQLQLLELE RDAEVEERRS WQEHSSLKEL QSRGVCLLKL QVSGQRTGLY  60
   61 GQRLVTFEPR KFGPAVVLPS NSFTSGDIVG LYDTNESSQL ATGVLTRITQ KSVIVAFDES 120
  121 HDFQLNLDRE NTYRLLKLAN DVTYKRLKKA LLTLKKYHSG PASSLIDVLL GGSTPSPATE 180
  181 IPPLTFYNTT LDPSQKEAVS FALAQKEVAI IHGPPGTGKT TTVVEIILQA VKQGLKVLCC 240
  241 APSNIAVDNL VERLALCKKQ ILRLGHPARL LESVQQHSLD AVLARSDNAQ IVADIRRDID 300
  301 QVFGKNKKTQ DKREKSNFRN EIKLLRKELK EREEAAIVQS LSAADVVLAT NTGASTDGPL 360
  361 KLLPEDYFDV VVVDECAQAL EASCWIPLLK APKCILAGDH KQLPPTTVSH KAALAGLSRS 420
  421 LMERLAEKHG AAVVRMLAVQ YRMHQAITRW ASEAMYHGQL TAHPSVAGHL LKDLPGVADT 480
  481 EETSVPLLLI DTAGCGLLEL EEEDSQSKGN PGEVRLVTLH IQALVDAGVQ AGDIAVIAPY 540
  541 NLQVDLLRQS LSNKHPELEI KSVDGFQGRE KEAVILTFVR SNRKGEVGFL AEDRRINVAV 600
  601 TRARRHVAVI CDSHTVNNHA FLKTLVDYFT EHGEVRTAFE YLDDIVPENY THEGSRSHSC 660
  661 APKPKCPTTS VRKPASAQES RQEARAATGH SRRKPSEKPL GSQVQPQHSS KANGSDRTGG 720
  721 TDRTEHFRAM IEEFVASKEA QLEFPTSLSS HDRLRVHQLA EEFGLKHDST GEGKARHITV 780
  781 SRRSPAGSGS ATPQPPSPPS PAQAEPEPQV EQPVGQPHGS TQLDLKALHL ERLQRQQGCQ 840
  841 AQSQLGGGSR PQKAPQKKKK KEPKGPAMAL PSEEDFDALV SAVVKADNTC SFTKCSASTT 900
  901 TLGQFCMHCS RRYCLSHHLP EIHGCGEKAR AHARQRISRE GVLYAGSGTK DRALDPAKRA 960
  961 QLQRKLDKKL GELSSQRTSK KKEKERGT

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Protein Overview: SMBP2_RAT

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: