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Protein Overview: SCN1B_MOUSE

General Information:
Name(s) found: SCN1B_MOUSE [Swiss-Prot]
Description(s) found:
Found 32 descriptions.
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  • Sodium channel subunit beta-1 OS=Mus musculus GN=Scn1b PE=1 SV=1 [Swiss-Prot]
    • Organism: Mus musculus
    Length: 218 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA]
    integral to membrane [IEA]
    Biological Process: sodium ion transport [IEA]
    ion transport [IEA]
    response to pyrethroid [UNKNOWN]
    transport [IEA]
    Molecular Function: sodium channel regulator activity [UNKNOWN]
    ion channel activity [IEA]
    sodium channel activity [IEA]
    voltage-gated ion channel activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTLLALVVG AALVSSAWGG CVEVDSDTEA VYGMTFKILC ISCKRRSETT AETFTEWTFR  60
   61 QKGTEEFVKI LRYENEVLQL EEDERFEGRV VWNGSRGTKD LQDLSIFITN VTYNHSGDYE 120
  121 CHVYRLLFFD NYEHNTSVVK KIHLEVVDKA NRDMASIVSE IMMYVLIVVL TIWLVAEMVY 180
  181 CYKKIAAATE AAAQENASEY LAITSESKEN CTGVQVAE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..218] PSI-BLAST 45.09691 Immunoglobulin light chain kappa variable domain, VL-kappa; Immunoglobulin light chain kappa constant domain, CL-kappa

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • receptor activity
    		•  3.0754311615326 bayes_pls_golite062009
  • signal transducer activity
    		•  2.92683710723714 bayes_pls_golite062009
  • molecular transducer activity
    		•  2.92683710723714 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  2.79758224858792 bayes_pls_golite062009
  • binding
    		•  2.31245946376548 bayes_pls_golite062009
  • protein binding
    		•  1.15877334904406 bayes_pls_golite062009
  • peptide antigen binding
    		•  0.87387132710884 bayes_pls_golite062009
  • olfactory receptor activity
    		•  0.76374091031142 bayes_pls_golite062009
  • cell adhesion molecule binding
    		•  0.63737386998612 bayes_pls_golite062009
  • integrin binding
    		•  0.599569390248921 bayes_pls_golite062009
  • receptor binding
    		•  0.125304929251743 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle