| Protein: | SCN1B_MOUSE |
| Organism: | Mus musculus |
| Length: | 218 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCN1B_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
191.0 | [0..1] | [210..1] |
|
|
184.0 | [0..4] | [210..7] |
|
|
182.0 | [0..1] | [210..1] |
|
Region A: Residues: [1-218] |
1 11 21 31 41 51
| | | | | |
1 MGTLLALVVG AALVSSAWGG CVEVDSDTEA VYGMTFKILC ISCKRRSETT AETFTEWTFR 60
61 QKGTEEFVKI LRYENEVLQL EEDERFEGRV VWNGSRGTKD LQDLSIFITN VTYNHSGDYE 120
121 CHVYRLLFFD NYEHNTSVVK KIHLEVVDKA NRDMASIVSE IMMYVLIVVL TIWLVAEMVY 180
181 CYKKIAAATE AAAQENASEY LAITSESKEN CTGVQVAE
|
| Detection Method: |  |
| Confidence: | 45.09691 |
| Match: | 1iqwL |
| Description: | Immunoglobulin light chain kappa variable domain, VL-kappa; Immunoglobulin light chain kappa constant domain, CL-kappa |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| receptor activity | 3.0754311615326 | bayes_pls_golite062009 |
| signal transducer activity | 2.92683710723714 | bayes_pls_golite062009 |
| molecular transducer activity | 2.92683710723714 | bayes_pls_golite062009 |
| transmembrane receptor activity | 2.79758224858792 | bayes_pls_golite062009 |
| binding | 2.31245946376548 | bayes_pls_golite062009 |
| protein binding | 1.15877334904406 | bayes_pls_golite062009 |
| peptide antigen binding | 0.87387132710884 | bayes_pls_golite062009 |
| olfactory receptor activity | 0.76374091031142 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 0.63737386998612 | bayes_pls_golite062009 |
| integrin binding | 0.599569390248921 | bayes_pls_golite062009 |
| receptor binding | 0.125304929251743 | bayes_pls_golite062009 |
