YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: ubc-6

General Information:
Name(s) found: ubc-6 / CE39712 [WormBase]
Description(s) found:
SHOW ONLY BEST
  • WBGene00006703 locus:ubc-6 status:Confirmed UniProt:B1Q233 protein_id:CCD68334.1 [WormBase]
  • gi|169404797|gb|ACA53533.1| Ubiquitin conjugating enzyme protein 6, isoform b [Caenorhabditis elegans] [NCBI NR]
  • gi|115532482|ref|NP_001040756.1| UBiquitin Conjugating enzyme family member (ubc-6) [Caenorhabditis elegans] [NCBI NR]
  • CE39712 WBGene00006703 locus:ubc-6 status:Confirmed UniProt:B1Q233_CAEEL protein_id:ACA53533.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE39712 WBGene00006703 locus:ubc-6 status:Confirmed UniProt:D1022.1b protein_id:ACA53533.1| [wormORF-contam.fasta]
  • CE39712 WBGene00006703 locus:ubc-6 status:Confirmed [wormpep160-contam.fasta]
  • UBiquitin Conjugating enzyme family member (ubc-6) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE39712 WBGene00006703 locus:ubc-6 status:Confirmed UniProt:B1Q233 protein_id:ACA53533.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE39712 WBGene00006703 locus:ubc-6 status:Confirmed UniProt:B1Q233 protein_id:CCD68334.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Isoform of Q18931, UBiquitin Conjugating enzyme OS=Caenorhabditis elegans GN=ubc-6 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 299 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: protein modification process [IEALink to PubMed article]
    ubiquitin cycle [IEALink to PubMed article]
    Molecular Function: small conjugating protein ligase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEAMELRQP TEMYHAQPME DNLFEWHFTI RGTLGTDFEG GIYHGRIIFP ADYPMKPPNL  60
   61 ILLTPNGRFE LNKKVCLSIS GYHPETWLPS WSIRTALLAL IGFLPSTPGG ALGSLDYPPK 120
  121 ERQRLAKLSC EWKCKECGCV MKTALLPITE DGQLKQTEEA KTLAAQLKFQ DESVVKKEVE 180
  181 AANNQKNPTE TEPSEETSSV PTENVEESEE DADEREEGTT VNVNSSEVPD VAQPAVQPIR 240
  241 DPQPLVFQHH APRLASTNFD YTLLYKIPVI ALCFAIFFTL LARRFLVDNL TSPKDGSEL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..184] PSI-BLAST 35.522879 Human ubiquitin-conjugating enzyme E2 J2
    2 View Details [185..299] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • small conjugating protein ligase activity
    		•  6.13787067729569 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  6.13342835108038 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  5.20679401190557 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  4.30935997378918 bayes_pls_golite062009
  • ligase activity
    		•  1.28816297541508 bayes_pls_golite062009
  • catalytic activity
    		•  0.891402822028799 bayes_pls_golite062009
  • binding
    		•  0.852142254811421 bayes_pls_golite062009
  • NEDD8 ligase activity
    		•  0.715654744941217 bayes_pls_golite062009
  • protein binding
    		•  0.470754319870613 bayes_pls_golite062009
  • protein kinase activity
    		•  0.0722326952092479 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle