YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ubc-6
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEAMELRQP TEMYHAQPME DNLFEWHFTI RGTLGTDFEG GIYHGRIIFP ADYPMKPPNL  60
   61 ILLTPNGRFE LNKKVCLSIS GYHPETWLPS WSIRTALLAL IGFLPSTPGG ALGSLDYPPK 120
  121 ERQRLAKLSC EWKCKECGCV MKTALLPITE DGQLKQTEEA KTLAAQLKFQ DESVVKKEVE 180
  181 AANNQKNPTE TEPSEETSSV PTENVEESEE DADEREEGTT VNVNSSEVPD VAQPAVQPIR 240
  241 DPQPLVFQHH APRLASTNFD YTLLYKIPVI ALCFAIFFTL LARRFLVDNL TSPKDGSEL

Type	Start	End	Confidence
Non-Cytoplasmic	1	261	0.52
Transmembrane Helix	262	282	0.84
Cytoplasmic	283	299	0.41