YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SYC_SCHPO

General Information:
Name(s) found: SYC_SCHPO [Swiss-Prot]
Description(s) found:
Found 2 descriptions.
SHOW ALL
  • Probable cysteine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC29E6.06c PE=3 SV=1 [Swiss-Prot]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 754 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTRNPAQSH WGVPKGQRTE LYVYNTLTHS KVPFVSNGSN LTWYCCGPTV YDASHMGHAR  60
   61 NYVTTDILRR ILQSYFGYNI TFVQNVTDID DKIILRARQQ YLFEEYKKQQ GTNKSHSEAR 120
  121 EKVTEAWFAY AKKNLPEPPS SMSEWPQWLA SHDIPTLAIN NPKLPMHVDA LKSALDALQV 180
  181 SEASEIISLD GFWPKVQDVL VPLLDAELGS TVTDPAIFRK LAAYWEDDFN KDMANLNVLP 240
  241 PTAVTRVSEY VPEIVDFVQR IIDRGYAYPV TDGSVYFDTE AFEKGGHFYA KLEPWNKGNR 300
  301 ELIAEGEGSL AALTGKKRPG DFALWKASKP GEPSWDSPWS KGRPGWHIEC SVMASALLGS 360
  361 NIDIHSGGID LAFPHHDNEL AQSEAYFDCP QWVNYFFHAG HLHIEGQKMS KSLKNFITIK 420
  421 EILKKFTPRQ LRLAFLLQQW NTQLDFKETL LAYVLNIEQA LENFFRTVRA LMNETEGVSA 480
  481 NGGHVPEKFD KLEIELLEKF QQTQQNTHLA LCDSFNTPLV MQHIDNLVTQ ANIYIREVGQ 540
  541 QPCSRLLGQI ASWITSMLQI FGLDENGHPN AVGWSSSKGS SSENTDAMPY IRAVSSFRDR 600
  601 VRELCIAKAS SQEILKACDI FRDYDMAALG VSFNDRPQGS ALVKLVDAEE LIAAREQKLE 660
  661 EERAKQAKKA QAKAEQEKKQ VERVMKGKTS PSEMFKMFKE YLSFDEAGLP TKMRGEDGSE 720
  721 IDVPKSRKKK LQKEYAQQEK LHKEYLSYIE SNKS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..112] PSI-BLAST 5.045757 Arginyl-tRNA synthetase (ArgRS); Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
    2 View Details [113..636] PSI-BLAST 68.09691 Cysteinyl-tRNA synthetase (CysRS)
    3 View Details [637..754] PSI-BLAST 4.0 Heavy meromyosin subfragment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.16276509815667 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  7.16276509815667 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.13957775963187 bayes_pls_golite062009
  • ligase activity
    		•  6.11211476973434 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
    		•  5.23703961447809 bayes_pls_golite062009
  • isoleucine-tRNA ligase activity
    		•  3.76808520367507 bayes_pls_golite062009
  • glutamate-tRNA ligase activity
    		•  2.63681738794687 bayes_pls_golite062009
  • catalytic activity
    		•  2.37674226834122 bayes_pls_golite062009
  • methionine-tRNA ligase activity
    		•  2.01261843164558 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
    		•  1.88984817882585 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
    		•  1.14187887833901 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  1.13743634264647 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.89131347796645 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.625793556381714 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.369886886936128 bayes_pls_golite062009
  • RNA binding
    		•  0.306683553109855 bayes_pls_golite062009
  • glutamine-tRNA ligase activity
    		•  0.118292082006187 bayes_pls_golite062009
  • binding
    		•  0.090743795600025 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle