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Protein Overview: Dscam-PT

General Information:
Name(s) found: Dscam-PT / FBpp0110389 [FlyBase]
Description(s) found:
Found 16 descriptions.
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  • The gene Down syndrome cell adhesion molecule is referred to in FlyBase by the symbol Dmel\Dscam (CG17800, FBgn0033159). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:3207059..3269374. It has the cytological map location 43A4-43B1. There is experimental evidence that it has the molecular function</span>: protein binding; bacterial binding; protein homodimerization activity; axon guidance receptor activity. There is experimental evidence that it is involved in the biological process</span>: dendrite self-avoidance; axon extension involved in axon guidance; axon guidance; phagocytosis; central nervous system morphogenesis; neuron development; axonal fasciculation; mushroom body development; peripheral nervous system development. 120 alleles are reported. The phenotypes of these alleles are annotated with 18 unique terms, many of which group under: nervous system; multi-cell-component structure; organ system; adult segment; embryonic nervous system; commissure; antennal segment; adult brain; peripheral nervous system; mushroom body. It has 59 annotated transcripts and 59 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 2032 amino acids

    Gene Ontology:
    Cellular Component: integral to plasma membrane [ISS]
    dendrite [IDA]
    neuronal cell body [IDA]
    axon [IDA]
    Biological Process: mushroom body development [IMP]
    dendrite self-avoidance [IDA][IMP]
    phagocytosis [IMP]
    axon guidance [IGI][IMP][TAS]
    peripheral nervous system development [IMP]
    neuron development [IMP]
    central nervous system morphogenesis [IMP]
    axonal fasciculation [IMP]
    axon extension involved in axon guidance [IMP]
    Molecular Function: protein binding [IDA]
    protein homodimerization activity [IPI]
    axon guidance receptor activity [IMP][NAS]
    bacterial cell surface binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE  60
   61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
  121 NQFGSIISRD VHVRAVVAQY YDTDVNKAYV IRGNAAVLKC EIPSFVADFV SVVSWHTDQN 180
  181 EDFLPGSEYD GKYLVLPSGE LHIREVGPED GYKSYQCRTK HRLTGETRLS ATKGRLVITE 240
  241 PVGSVAPKVN KNDEFSHDRI AIGGMVALRC PAQSFPVPVY RWYKFIEGTT RKQAVVLNDR 300
  301 VKQVSGTLII KDAVVEDSGK YLCVVNNSVG GESVETVLTV TAPLSAKIDP PTQTVDFGRP 360
  361 AVFTCQYTGN PIKTVSWMKD GKAIGHSEPV LRIESVKKED KGMYQCFVRN DQESAEASAE 420
  421 LKLGGRFDPP VIRQAFQEET MEPGPSVFLK CVAGGNPTPE ISWELDGKKI ANNDRYQVGQ 480
  481 YVTVNGDVVS YLNITSVHAN DGGLYKCIAK SKVGVAEHSA KLNVYGLPYI RQMEKKAIVA 540
  541 GETLIVTCPV AGYPIDSIVW ERDNRALPIN RKQKVFPNGT LIIENVERNS DQATYTCVAK 600
  601 NQEGYSARGS LEVQVMVAPQ ISPFSFGDEP LNRGEVASVN CVVPKGDLPL DIYWTLNSAL 660
  661 IVNGEMGFTL VRLNKRTSSL NVDSLEAVHR GSYKCIANNS AGYAEYVSTL DVNVPPRWIL 720
  721 EPTDKAFAQG SDAKVECKAD GFPKPQVTWK KAVGDTPGEY KDLKKSDNIR VEEGTLHVDN 780
  781 IQKTNEGYYL CEAINGIGSG LSAVIMISVQ APPEFTEKLR NQTARRGEPA VLQCEAKGEK 840
  841 PIGILWNMNN MRLDPKNDNR YTIREEILST GVMSSLSIKR TERSDSALFT CVATNAFGSD 900
  901 DASINMIVQE VPEMPYALKV LDKSGRSVQL SWAQPYDGNS PLDRYIIEFK RSRASWSEID 960
  961 RVIVPGHTTE AQVQKLSPAT TYNIRIVAEN AIGTSQSSEA VTIITAEEAP SGKPQNIKVE1020
 1021 PVNQTTMRVT WKPPPRTEWN GEILGYYVGY KLSNTNSSYV FETINFITEE GKEHNLELQN1080
 1081 LRVYTQYSVV IQAFNKIGAG PLSEEEKQFT AEGTPSQPPS DTACTTLTSQ TIRVGWVSPP1140
 1141 LESANGVIKT YKVVYAPSDE WYDETKRHYK KTASSDTVLH GLKKYTNYTM QVLATTAGGD1200
 1201 GVRSVPIHCQ TEPDVPEAPT DVKALVMGNA AILVSWRPPA QPNGIITQYT VYSKAEGAET1260
 1261 ETKTQKVPHY QMSFEATELE KNKPYEFWVT ASTTIGEGQQ SKSIVAMPSD QVPAKIASFD1320
 1321 DTFTATFKED AKMPCLAVGA PQPEITWKIK GVEFSANDRM RVLPDGSLLI KSVNRQDAGD1380
 1381 YSCHAENSIA KDSITHKLIV LAPPQSPHVT LSATTTDALT VKLKPHEGDT APLHGYTLHY1440
 1441 KPEFGEWETS EVSVDSQKHN IEGLLCGSRY QVYATGFNNI GAGEASDILN TRTKGQKPKL1500
 1501 PEKPRFIEVS SNSVSLHFKA WKDGGCPMSH FVVESKKRDQ IEWNQISNNV KPDNNYVVLD1560
 1561 LEPATWYNLR ITAHNSAGFT VAEYDFATLT VTGGTIAPLD DGSGHGNVHT RIRLPAWMPE1620
 1621 WLDLNFMVPL IATVVVVAVG ICVVCVALSR RRADDMRGGQ KDVYYDVVYN QTMGPGATLD1680
 1681 KRRPDLRDEL GYIAPPNRKL PPVPGSNYNT CDRIKRGRGG LRSNHSTWDP RRNPNLYEEL1740
 1741 KAPPVPMHGN HYGHAHGNAE CHYRHPGMED EICPYATFHL LGFREEMDPT KAMNFQTFPH1800
 1801 QNGHAGPVPG HAGTMLPPGH PGHVHSRSGS QSMPRANRYQ RKNSQGGQSS IYTPAPEYDD1860
 1861 PANCAEEDQY RRYTRVNSQG GSLYSGPGPE YDDPANCAPE EDQYGSQYGG PYGQPYDHYG1920
 1921 SRGSMGRRSI GSARNPGNGS PEPPPPPPRN HDMSNSSFND SKESNEISEA ECDRDHGPRG1980
 1981 NYGAVKRSPQ PKDQRTTEEM RKLIERNETG PKQLQLQQAN GAGFTAYDTM AV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..138] PSI-BLAST 77.09691 No description for 2v5sA was found.
    2 View Details [139..251] PSI-BLAST 8.69897 Immunoglobulin heavy chain variable domain, VH; Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma; Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma; Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
    3 View Details [252..896] PSI-BLAST 59.69897 Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data
    4 View Details [897..1103] PSI-BLAST 21.522879 CRYSTAL STRUCTURE OF TANDEM TYPE III FIBRONECTIN DOMAINS FROM DROSOPHILA NEUROGLIAN AT 2.0 ANGSTROMS
    5 View Details [1104..1214] PSI-BLAST 11.09691 The solution structure of the third fibronectin type III domain of human Neogenin
    6 View Details [1215..1308] PSI-BLAST 8.522879 The fourth FN3 domain of human sidekick-2
    7 View Details [1309..1605] PSI-BLAST 24.045757 No description for 2v5yA was found.
    8 View Details [1606..1783] deduced N/A No confident structure predictions are available.
    9 View Details [1784..2032] MSA 2.116993 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • pattern binding
    		•  0.44460010885883 bayes_pls_golite062009
    6
    Term Confidence Notes
  • pattern binding
    		•  0.44460010885883 bayes_pls_golite062009
    7 No functions predicted.
    8 No functions predicted.
    9 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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