| Protein: | Dscam-PT |
| Organism: | Drosophila melanogaster |
| Length: | 2032 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PT.
| Description | E-value | Query Range |
Subject Range |
|
|
1511.0 | [0..1] | [2032..1] |
|
Region A: Residues: [1-138] |
1 11 21 31 41 51
| | | | | |
1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE 60
61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
121 NQFGSIISRD VHVRAVVA
|
| Detection Method: |  |
| Confidence: | 77.09691 |
| Match: | 2v5sA |
| Description: | No description for 2v5sA was found. |
|
Region A: Residues: [139-251] |
1 11 21 31 41 51
| | | | | |
1 QYYDTDVNKA YVIRGNAAVL KCEIPSFVAD FVSVVSWHTD QNEDFLPGSE YDGKYLVLPS 60
61 GELHIREVGP EDGYKSYQCR TKHRLTGETR LSATKGRLVI TEPVGSVAPK VNK
|
| Detection Method: | |
| Confidence: | 8.69897 |
| Match: | 1igtB |
| Description: | Immunoglobulin heavy chain variable domain, VH; Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma; Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma; Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [252-896] |
1 11 21 31 41 51
| | | | | |
1 NDEFSHDRIA IGGMVALRCP AQSFPVPVYR WYKFIEGTTR KQAVVLNDRV KQVSGTLIIK 60
61 DAVVEDSGKY LCVVNNSVGG ESVETVLTVT APLSAKIDPP TQTVDFGRPA VFTCQYTGNP 120
121 IKTVSWMKDG KAIGHSEPVL RIESVKKEDK GMYQCFVRND QESAEASAEL KLGGRFDPPV 180
181 IRQAFQEETM EPGPSVFLKC VAGGNPTPEI SWELDGKKIA NNDRYQVGQY VTVNGDVVSY 240
241 LNITSVHAND GGLYKCIAKS KVGVAEHSAK LNVYGLPYIR QMEKKAIVAG ETLIVTCPVA 300
301 GYPIDSIVWE RDNRALPINR KQKVFPNGTL IIENVERNSD QATYTCVAKN QEGYSARGSL 360
361 EVQVMVAPQI SPFSFGDEPL NRGEVASVNC VVPKGDLPLD IYWTLNSALI VNGEMGFTLV 420
421 RLNKRTSSLN VDSLEAVHRG SYKCIANNSA GYAEYVSTLD VNVPPRWILE PTDKAFAQGS 480
481 DAKVECKADG FPKPQVTWKK AVGDTPGEYK DLKKSDNIRV EEGTLHVDNI QKTNEGYYLC 540
541 EAINGIGSGL SAVIMISVQA PPEFTEKLRN QTARRGEPAV LQCEAKGEKP IGILWNMNNM 600
601 RLDPKNDNRY TIREEILSTG VMSSLSIKRT ERSDSALFTC VATNA
|
| Detection Method: | |
| Confidence: | 59.69897 |
| Match: | 1e07A |
| Description: | Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [897-1103] |
1 11 21 31 41 51
| | | | | |
1 FGSDDASINM IVQEVPEMPY ALKVLDKSGR SVQLSWAQPY DGNSPLDRYI IEFKRSRASW 60
61 SEIDRVIVPG HTTEAQVQKL SPATTYNIRI VAENAIGTSQ SSEAVTIITA EEAPSGKPQN 120
121 IKVEPVNQTT MRVTWKPPPR TEWNGEILGY YVGYKLSNTN SSYVFETINF ITEEGKEHNL 180
181 ELQNLRVYTQ YSVVIQAFNK IGAGPLS
|
| Detection Method: | |
| Confidence: | 21.522879 |
| Match: | 1cfbA |
| Description: | CRYSTAL STRUCTURE OF TANDEM TYPE III FIBRONECTIN DOMAINS FROM DROSOPHILA NEUROGLIAN AT 2.0 ANGSTROMS |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1104-1214] |
1 11 21 31 41 51
| | | | | |
1 EEEKQFTAEG TPSQPPSDTA CTTLTSQTIR VGWVSPPLES ANGVIKTYKV VYAPSDEWYD 60
61 ETKRHYKKTA SSDTVLHGLK KYTNYTMQVL ATTAGGDGVR SVPIHCQTEP D
|
| Detection Method: | |
| Confidence: | 11.09691 |
| Match: | 1x5hA |
| Description: | The solution structure of the third fibronectin type III domain of human Neogenin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| pattern binding | 0.44460010885883 | bayes_pls_golite062009 |
|
Region A: Residues: [1215-1308] |
1 11 21 31 41 51
| | | | | |
1 VPEAPTDVKA LVMGNAAILV SWRPPAQPNG IITQYTVYSK AEGAETETKT QKVPHYQMSF 60
61 EATELEKNKP YEFWVTASTT IGEGQQSKSI VAMP
|
| Detection Method: | |
| Confidence: | 8.522879 |
| Match: | 1wfnA |
| Description: | The fourth FN3 domain of human sidekick-2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| pattern binding | 0.44460010885883 | bayes_pls_golite062009 |
|
Region A: Residues: [1309-1605] |
1 11 21 31 41 51
| | | | | |
1 SDQVPAKIAS FDDTFTATFK EDAKMPCLAV GAPQPEITWK IKGVEFSAND RMRVLPDGSL 60
61 LIKSVNRQDA GDYSCHAENS IAKDSITHKL IVLAPPQSPH VTLSATTTDA LTVKLKPHEG 120
121 DTAPLHGYTL HYKPEFGEWE TSEVSVDSQK HNIEGLLCGS RYQVYATGFN NIGAGEASDI 180
181 LNTRTKGQKP KLPEKPRFIE VSSNSVSLHF KAWKDGGCPM SHFVVESKKR DQIEWNQISN 240
241 NVKPDNNYVV LDLEPATWYN LRITAHNSAG FTVAEYDFAT LTVTGGTIAP LDDGSGH
|
| Detection Method: | |
| Confidence: | 24.045757 |
| Match: | 2v5yA |
| Description: | No description for 2v5yA was found. |
|
Region A: Residues: [1606-1783] |
1 11 21 31 41 51
| | | | | |
1 GNVHTRIRLP AWMPEWLDLN FMVPLIATVV VVAVGICVVC VALSRRRADD MRGGQKDVYY 60
61 DVVYNQTMGP GATLDKRRPD LRDELGYIAP PNRKLPPVPG SNYNTCDRIK RGRGGLRSNH 120
121 STWDPRRNPN LYEELKAPPV PMHGNHYGHA HGNAECHYRH PGMEDEICPY ATFHLLGF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1784-2032] |
1 11 21 31 41 51
| | | | | |
1 REEMDPTKAM NFQTFPHQNG HAGPVPGHAG TMLPPGHPGH VHSRSGSQSM PRANRYQRKN 60
61 SQGGQSSIYT PAPEYDDPAN CAEEDQYRRY TRVNSQGGSL YSGPGPEYDD PANCAPEEDQ 120
121 YGSQYGGPYG QPYDHYGSRG SMGRRSIGSA RNPGNGSPEP PPPPPRNHDM SNSSFNDSKE 180
181 SNEISEAECD RDHGPRGNYG AVKRSPQPKD QRTTEEMRKL IERNETGPKQ LQLQQANGAG 240
241 FTAYDTMAV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
