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Protein Overview: gi|108864074

General Information:
Name(s) found: gi|108864074 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|108864074|gb|ABG22394.1| SWIRM domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 651 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRKASSTSD SRLKWRKWKR NPTASPSPSN RSSAAAAAAD HSDDSDSAAV NEDDDSAVPE  60
   61 DADDETLAGA EDPVLDLREA EVLPSAEPVS AFPVATRRVV NRPHPSVLAV IAAERSACAG 120
  121 EGSAAVAAAP VLENISYGQQ QVLSGVLPDH ASLATDTDKP STYVCTPPNL MEGHGVTKQF 180
  181 QGRLHVVPKH SDWFSPGIVH RLERQVVPQF FSGKSPGNTP EKYMLLRNKV IAKYLENPSK 240
  241 RLAFAECQGL VANTAELYDL SRIVRFLDTW GIINYLASGS VHRGLRMATS LLREEPTGEL 300
  301 QLLTAPLKSI DGLILFDRPK CNLQAEDISS LASNSEVVDF DAGLAELDGK IRERLSESSC 360
  361 SYCLQPLTSL HYQSLKEADI ALCSDCFHDA RYITGHSSLD FQRIDGDNDR SENDGDSWTD 420
  421 QETLLLLEGI EKYNDNWNNI AEHVGTKSKA QCIYHFIRLP VEDGLLENIE VPDASVPFRA 480
  481 ETNGYPHLDC NGSTSGNLPQ KIPPDNQLPF INSSNPVMSL VGFLASAMGP RVAASCASAA 540
  541 LSVLTVDDDS RVNSEGICSD SRGQGPHPNF RDHNGGVSSS ISPEKVKHAA MCGLSAAATK 600
  601 AKLFADQEER EIQRLTATVI NHQVSVNVAI LFTFGPCFSH YCCHQGVKNR R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..191] MSA 24.175996 View MSA. No confident structure predictions are available.
    2 View Details [192..304] PSI-BLAST 27.154902 Structure and function of the SWIRM domain, a conserved protein module found in chromatin regulatory complexes
    3 View Details [305..404] FFAS03 2.35 No description for 2fc7A was found.
    4 View Details [405..515] PSI-BLAST 7.39794 No description for 2iw5B was found.
    5 View Details [516..651] MSA 1.12499 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  2.70912934275371 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.69310847474187 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.31493818053907 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  2.01832887083768 bayes_pls_golite062009
  • DNA binding
    		•  2.0126776192216 bayes_pls_golite062009
  • protein binding
    		•  1.48593945455888 bayes_pls_golite062009
  • transcription factor activity
    		•  1.23220438818624 bayes_pls_golite062009
  • transcription factor binding
    		•  0.987482369490121 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.876703944945945 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.842690858803658 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.740437317894105 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.283643164965801 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.190105232754922 bayes_pls_golite062009
  • catalytic activity
    		•  0.168711389690753 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.137379573046724 bayes_pls_golite062009
  • ligase activity
    		•  0.130845594476754 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.121420290407334 bayes_pls_golite062009
  • transcription activator activity
    		•  0.111490592727037 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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    Created and Maintained by: Michael Riffle