| Protein: | gi|108864074 |
| Organism: | Oryza sativa Japonica Group |
| Length: | 651 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108864074.
| Description | E-value | Query Range |
Subject Range |
|
|
491.0 | [0..1] | [636..1] |
|
Region A: Residues: [1-191] |
1 11 21 31 41 51
| | | | | |
1 MPRKASSTSD SRLKWRKWKR NPTASPSPSN RSSAAAAAAD HSDDSDSAAV NEDDDSAVPE 60
61 DADDETLAGA EDPVLDLREA EVLPSAEPVS AFPVATRRVV NRPHPSVLAV IAAERSACAG 120
121 EGSAAVAAAP VLENISYGQQ QVLSGVLPDH ASLATDTDKP STYVCTPPNL MEGHGVTKQF 180
181 QGRLHVVPKH S
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [192-304] |
1 11 21 31 41 51
| | | | | |
1 DWFSPGIVHR LERQVVPQFF SGKSPGNTPE KYMLLRNKVI AKYLENPSKR LAFAECQGLV 60
61 ANTAELYDLS RIVRFLDTWG IINYLASGSV HRGLRMATSL LREEPTGELQ LLT
|
| Detection Method: | |
| Confidence: | 27.154902 |
| Match: | 2fq3A |
| Description: | Structure and function of the SWIRM domain, a conserved protein module found in chromatin regulatory complexes |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [305-404] |
1 11 21 31 41 51
| | | | | |
1 APLKSIDGLI LFDRPKCNLQ AEDISSLASN SEVVDFDAGL AELDGKIRER LSESSCSYCL 60
61 QPLTSLHYQS LKEADIALCS DCFHDARYIT GHSSLDFQRI
|
| Detection Method: | |
| Confidence: | 2.35 |
| Match: | 2fc7A |
| Description: | No description for 2fc7A was found. |
| Term | Confidence | Notes |
| binding | 2.70912934275371 | bayes_pls_golite062009 |
| transcription regulator activity | 2.69310847474187 | bayes_pls_golite062009 |
| nucleic acid binding | 2.31493818053907 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.01832887083768 | bayes_pls_golite062009 |
| DNA binding | 2.0126776192216 | bayes_pls_golite062009 |
| protein binding | 1.48593945455888 | bayes_pls_golite062009 |
| transcription factor activity | 1.23220438818624 | bayes_pls_golite062009 |
| transcription factor binding | 0.987482369490121 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.876703944945945 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.842690858803658 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.740437317894105 | bayes_pls_golite062009 |
| transcription repressor activity | 0.283643164965801 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.190105232754922 | bayes_pls_golite062009 |
| catalytic activity | 0.168711389690753 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.137379573046724 | bayes_pls_golite062009 |
| ligase activity | 0.130845594476754 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.121420290407334 | bayes_pls_golite062009 |
| transcription activator activity | 0.111490592727037 | bayes_pls_golite062009 |
|
Region A: Residues: [405-515] |
1 11 21 31 41 51
| | | | | |
1 DGDNDRSEND GDSWTDQETL LLLEGIEKYN DNWNNIAEHV GTKSKAQCIY HFIRLPVEDG 60
61 LLENIEVPDA SVPFRAETNG YPHLDCNGST SGNLPQKIPP DNQLPFINSS N
|
| Detection Method: | |
| Confidence: | 7.39794 |
| Match: | 2iw5B |
| Description: | No description for 2iw5B was found. |
|
Region A: Residues: [516-651] |
1 11 21 31 41 51
| | | | | |
1 PVMSLVGFLA SAMGPRVAAS CASAALSVLT VDDDSRVNSE GICSDSRGQG PHPNFRDHNG 60
61 GVSSSISPEK VKHAAMCGLS AAATKAKLFA DQEEREIQRL TATVINHQVS VNVAILFTFG 120
121 PCFSHYCCHQ GVKNRR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
