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Protein Overview: gi|108706960

General Information:
Name(s) found: gi|108706960 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|108706960|gb|ABF94755.1| 5'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 416 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACCCLRAST APRFLLFRAA ARRAPLPVAV SRKSVLPITD MIENFQGPSM ENIPRIPLYD  60
   61 DSLPSSLLTT SPNPSDSVAH ADPSKSRIML VDGTSVMYRS YYKILAQLQH GQLEHADGNG 120
  121 DWVLTIFKAL SLVLDMLEFI PSHAAVVFDH DGVPYGHYTA MPSKECHMAK GMTFRHMLYP 180
  181 SYKSNRIPTP DTIVQGMQYL KASIKAMSIK VIEVPGVEAD DVIGTLAVSS VSAGYKVRIV 240
  241 SPDKDFFQIL SPSLRLLRIA PRGSGMVSFG VEDFVKRYGA LKPSQFVDVV ALSGDKADNI 300
  301 PGVEGIGDIN AVKLITKFGS LENLLKSVDE VEEERIKQAL ISQSEQAMLC KSLATLRSDL 360
  361 PSYMVPFKTS DLVFQKPKDD GAKFIKLLRA LEAYAEGSSA DLIIRRAAYL WNKLNS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..416] PSI-BLAST 68.0 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • deoxyribonuclease activity
    		•  2.76214864778674 bayes_pls_golite062009
  • endonuclease activity
    		•  2.56010795198277 bayes_pls_golite062009
  • flap endonuclease activity
    		•  2.53758571886688 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  2.52591027275626 bayes_pls_golite062009
  • exonuclease activity
    		•  2.5100646091515 bayes_pls_golite062009
  • hydrolase activity
    		•  2.33175366185717 bayes_pls_golite062009
  • 5'-3' exonuclease activity
    		•  2.29772244408635 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  2.13887861178898 bayes_pls_golite062009
  • catalytic activity
    		•  1.74578892363435 bayes_pls_golite062009
  • exodeoxyribonuclease activity
    		•  1.70427268530827 bayes_pls_golite062009
  • exodeoxyribonuclease activity, producing 5'-phosphomonoesters
    		•  1.70203514795969 bayes_pls_golite062009
  • nuclease activity
    		•  1.66579180796794 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  1.34815460610781 bayes_pls_golite062009
  • 5'-3' exodeoxyribonuclease activity
    		•  0.99824405209499 bayes_pls_golite062009
  • single-stranded DNA specific exodeoxyribonuclease activity
    		•  0.93326471256937 bayes_pls_golite062009
  • double-stranded DNA specific exodeoxyribonuclease activity
    		•  0.75324098318674 bayes_pls_golite062009
  • 5'-flap endonuclease activity
    		•  0.59155477779901 bayes_pls_golite062009
  • endodeoxyribonuclease activity, producing 5'-phosphomonoesters
    		•  0.44366322002827 bayes_pls_golite062009
  • binding
    		•  0.135870115528543 bayes_pls_golite062009
  • single-stranded DNA specific 5'-3' exodeoxyribonuclease activity
    		•  0.0390389256036001 bayes_pls_golite062009
  • DNA binding
    		•  0.0110216579283602 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.76

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle