| Protein: | gi|108706960 |
| Organism: | Oryza sativa Japonica Group |
| Length: | 416 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108706960.
| Description | E-value | Query Range |
Subject Range |
|
|
375.0 | [0..1] | [416..1] |
|
Region A: Residues: [1-416] |
1 11 21 31 41 51
| | | | | |
1 MACCCLRAST APRFLLFRAA ARRAPLPVAV SRKSVLPITD MIENFQGPSM ENIPRIPLYD 60
61 DSLPSSLLTT SPNPSDSVAH ADPSKSRIML VDGTSVMYRS YYKILAQLQH GQLEHADGNG 120
121 DWVLTIFKAL SLVLDMLEFI PSHAAVVFDH DGVPYGHYTA MPSKECHMAK GMTFRHMLYP 180
181 SYKSNRIPTP DTIVQGMQYL KASIKAMSIK VIEVPGVEAD DVIGTLAVSS VSAGYKVRIV 240
241 SPDKDFFQIL SPSLRLLRIA PRGSGMVSFG VEDFVKRYGA LKPSQFVDVV ALSGDKADNI 300
301 PGVEGIGDIN AVKLITKFGS LENLLKSVDE VEEERIKQAL ISQSEQAMLC KSLATLRSDL 360
361 PSYMVPFKTS DLVFQKPKDD GAKFIKLLRA LEAYAEGSSA DLIIRRAAYL WNKLNS
|
| Detection Method: |  |
| Confidence: | 68.0 |
| Match: | 1bgxT |
| Description: | 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| deoxyribonuclease activity | 2.76214864778674 | bayes_pls_golite062009 |
| endonuclease activity | 2.56010795198277 | bayes_pls_golite062009 |
| flap endonuclease activity | 2.53758571886688 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 2.52591027275626 | bayes_pls_golite062009 |
| exonuclease activity | 2.5100646091515 | bayes_pls_golite062009 |
| hydrolase activity | 2.33175366185717 | bayes_pls_golite062009 |
| 5'-3' exonuclease activity | 2.29772244408635 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 2.13887861178898 | bayes_pls_golite062009 |
| catalytic activity | 1.74578892363435 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity | 1.70427268530827 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity, producing 5'-phosphomonoesters | 1.70203514795969 | bayes_pls_golite062009 |
| nuclease activity | 1.66579180796794 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 1.34815460610781 | bayes_pls_golite062009 |
| 5'-3' exodeoxyribonuclease activity | 0.99824405209499 | bayes_pls_golite062009 |
| single-stranded DNA specific exodeoxyribonuclease activity | 0.93326471256937 | bayes_pls_golite062009 |
| double-stranded DNA specific exodeoxyribonuclease activity | 0.75324098318674 | bayes_pls_golite062009 |
| 5'-flap endonuclease activity | 0.59155477779901 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity, producing 5'-phosphomonoesters | 0.44366322002827 | bayes_pls_golite062009 |
| binding | 0.135870115528543 | bayes_pls_golite062009 |
| single-stranded DNA specific 5'-3' exodeoxyribonuclease activity | 0.0390389256036001 | bayes_pls_golite062009 |
| DNA binding | 0.0110216579283602 | bayes_pls_golite062009 |
