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Protein Overview: gi|109503786, gi...

General Information:
Name(s) found: gi|109503786 [NCBI NR]
gi|109503061 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|109503786|ref|XP_001061229.1| PREDICTED: similar to DNA excision repair protein ERCC-6 (ATP-dependent helicase ERCC6) (Cockayne syndrome protein CSB) [Rattus norvegicus] [NCBI NR]
  • gi|109503061|ref|XP_224627.4| PREDICTED: similar to DNA excision repair protein ERCC-6 (ATP-dependent helicase ERCC6) (Cockayne syndrome protein CSB) [Rattus norvegicus] [NCBI NR]
    • Organism: Rattus norvegicus
    Length: 1476 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN]
    soluble fraction [UNKNOWN]
    transcription elongation factor complex [UNKNOWN]
    nucleolus [UNKNOWN]
    cellular_component [ND]
    nucleoplasm [UNKNOWN]
    Biological Process: DNA repair [UNKNOWN]
    biological_process [ND]
    response to X-ray [UNKNOWN]
    pyrimidine dimer repair [UNKNOWN]
    base-excision repair [UNKNOWN]
    transcription-coupled nucleotide-excision repair [UNKNOWN]
    activation of JNKK activity [UNKNOWN]
    activation of JUN kinase activity [UNKNOWN]
    DNA damage response, signal transduction resulting in induction of apoptosis [UNKNOWN]
    response to UV [UNKNOWN]
    response to superoxide [UNKNOWN]
    response to DNA damage stimulus [UNKNOWN]
    response to toxin [UNKNOWN]
    response to oxidative stress [UNKNOWN]
    photoreceptor cell maintenance [UNKNOWN]
    response to gamma radiation [UNKNOWN]
    response to UV-B [UNKNOWN]
    positive regulation of RNA elongation [UNKNOWN]
    Molecular Function: DNA binding [UNKNOWN][IEA]
    ATP binding [UNKNOWN][IEA]
    [NOT]DNA helicase activity [UNKNOWN]
    transcription elongation regulator activity [UNKNOWN]
    DNA-dependent ATPase activity [UNKNOWN]
    protein binding [UNKNOWN]
    protein C-terminus binding [UNKNOWN]
    protein N-terminus binding [UNKNOWN]
    helicase activity [IEA]
    chromatin binding [UNKNOWN]
    protein complex binding [UNKNOWN]
    molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHEEIPNST QPQGQDWLPG QHVSADRDIP AGQETAGDSE AGKCLSSPSC DHGPSTSAEA  60
   61 CVLAATRWGP ALLHIDRHQI PAVEPSAQAL ELQGLGVDVY DQAVLEEGVL QQVDSAMHEA 120
  121 SRVAQRADAE KEYQSVLDDL MSCTTSLRQI NKIIEQLSPQ AASNRDINRK LDSVKRQKYN 180
  181 KEQQLKKITA KQKRLQAILG GAEVHVELDH GSLEEEDAEP GPSCLGSMLM PAQESAWEEL 240
  241 IRTGQMTPFG TPAPQKQEKK PRKIMLNEAS GFEKYLADQA QLSFKRKKQA ANKRTAKKAV 300
  301 VVSESSRGPN ETKPNQRSQA LSQTDKRLKK HIRKLQRRAL QFQGKVGLQR GKRPLEPEER 360
  361 PGAEGDTEGE ESGSSPTDGE EEEEQEEEGV AVLSSDDISY ELKPLRKGQK YEKKVPVQEI 420
  421 DDDFFPSSEE EDEAVEGRGG GRKVSRRPDD GDEDYYKQRL RRWNRLRLQD KEKLKLEDDS 480
  481 EESDAEFDEG FKVPGFLFKK LFKYQQTGVR WLWELHCQQA GGILGDEMGL GKTIQIIAFL 540
  541 AGLSYSKIRT RGSNYRFEGL GPTLIVCPTT VMHQWVKEFH TWWPPFRVAI LHETGSCAHR 600
  601 KERLVRDIVH CHGVLITSYS YIRLMQDDIS RHDWHYVILD EGHKIRNPNA AVTLACKQFR 660
  661 TPHRIILSGS PMQNNLRELW SLFDFTFPGK LGTLPVFMEQ FSVPITMGGY SNASPVQVKT 720
  721 AYKCACVLRD TINPYLLRRM KSDVKMSLSL PDKNEQVLFC RLTDEQHKVY QNFIDSKAVY 780
  781 RILNGENQIF SGLVALRKIC NHPDLFSGGP KNTSALPEDG LEEEQFGYWK RSGKMIVVES 840
  841 LLKIWHKQGQ RVLLFSQSRQ MLHILEVFLR AHKYSYLKMD GTTTIASRQP LITKYNEDTS 900
  901 IFVFLLTTRV GGLGVNLTGA NRVIIYDPDW NPSTDTQARE RAWRIGQKKQ VTVYRLLTAG 960
  961 TIEEKIYHRQ IFKQFLTNRV LKDPKQRRFF KSNDLYELFT LTSPDASQGT ETSAIFAGTG1020
 1021 SNIQTLKCHF KKRTPPVLQM DPKRKKPLVS DTSVNGATVM EEKSQGSGAT GSVPSTESGP1080
 1081 LKSDRHTDGS RASSVGFGEE ADAGSTLEHL SGLSGDSPAV DHTSRLSAVA STSEKQGSSY1140
 1141 EGECCQAQTG PVHLSEQTEG HFSKHKSKRK HDAAEEETTE KCPQPKQKAK NSRHHRDAKF1200
 1201 EGTRVPHLVK KRRYHQQTTE QESGAKDRSS DDYVLEKLFK KSVGVHSVVK HDAIIDGSSP1260
 1261 DYVLVEAEAN RVAQDALKAL RLSRQQCLGA TSGVPTWTGH RGISGAPAGV KKRFGQKRNS1320
 1321 SLPVQRPSSL TERTQVTNMK KEGEAHTAEH FSGKEDGASS SGAPSSSSLL ARMRARNHMI1380
 1381 LPERLESDGE QLAGAAAAAA PPCSTEHDAL LVDMRNFIAF QAQVDGQAST QEILQAFESK1440
 1441 LSVAQSCVFR ELLRNLCNFH RTPGGEGIWK LKPEYC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle