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Protein Overview: gi|109487070

General Information:
Name(s) found: gi|109487070 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|109487070|ref|XP_001061493.1| PREDICTED: similar to excision repair cross-complementing rodent repair deficiency, complementation group 5 [Rattus norvegicus] [NCBI NR]
    • Organism: Rattus norvegicus
    Length: 1041 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN][IEA]
    DNA-directed RNA polymerase II, holoenzyme [UNKNOWN]
    holo TFIIH complex [UNKNOWN]
    cellular_component [ND]
    nucleoplasm [UNKNOWN]
    Biological Process: multicellular organism growth [UNKNOWN]
    DNA repair [UNKNOWN]
    biological_process [ND]
    nucleotide-excision repair, DNA damage removal [UNKNOWN]
    nucleotide-excision repair, DNA incision, 3'-to lesion [UNKNOWN]
    UV protection [UNKNOWN]
    determination of adult lifespan [UNKNOWN]
    negative regulation of apoptosis [UNKNOWN]
    transcription-coupled nucleotide-excision repair [UNKNOWN]
    nucleotide-excision repair [UNKNOWN][IEA]
    response to UV-C [UNKNOWN]
    response to UV [UNKNOWN]
    Molecular Function: protein binding [UNKNOWN]
    protein homodimerization activity [UNKNOWN]
    endonuclease activity [UNKNOWN][IEA]
    protein N-terminus binding [UNKNOWN]
    bubble DNA binding [UNKNOWN]
    double-stranded DNA binding [UNKNOWN]
    endodeoxyribonuclease activity [UNKNOWN]
    molecular_function [ND]
    single-stranded DNA binding [UNKNOWN][IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVQGLWKLL ECSGRPVSPE ALEGKVLAVD ISIWLNQALK GVRDRHGNAI ENAHLLTLFH  60
   61 RLCKLLFFRI RPIFVFDGDA PLLKKQTLAK RRQKKDSASI DSRKTTEKLL KTFLKRQALK 120
  121 TAFRSKSSEE EDEKQWQARM DQKQALQEEF FHNPHAIDIE SEDFSSLPPE VKHEILTDMK 180
  181 EFTKRRRTLF EAMPEESNDF SQYQLKGLLK KNYLNQHIEN VQKEMNQEHS GQIQRQYEDE 240
  241 GGFLKEVESR RVVAEDTSHY ILIKGIQGKK VVDVDLESLP SSSKEHSVSF NLKSSPYEKV 300
  301 KPESEPEATP PSPRTLHAIQ VAMLGGSSEE EPESGEGGQS KERSAWATAD AGSISPQTCA 360
  361 AIQRALDDDE EERMCASSDN LAVEMLLGNG LKQEHADEVV VKGGGVPLDT ASLLPSVTEV 420
  421 EECVASASND KEQTASTHAS STACHPGEVP KETVSPAHVV SEASQISSEC EVAGRPVPLP 480
  481 SAFIETPCSY ASGVLSEREL TLAPPIRTHS HQRTSIDPEE PELQNGLCPP KNTCNSSHLS 540
  541 SDDETEGGQN PASKAGSTVH VPSEAVGNVE NVSSSNAEEH GDFQKTIQLW EMPEAAAREL 600
  601 ISAPESLGPV EMESEESESD GSFIEVQSVI SNDELQIESS EISKHLSEKD AEEPKETLEE 660
  661 GSPRNTECLL QDSSDIKAMK EHRKEDRGAE DSPDEWQDVN LEELDALESN LLAEQNSLEA 720
  721 QKQQQDRIAA SVTGQMFLES QELLRLFGIP YIQAPMEAEA QCAILDLTDQ TSGTITDDSD 780
  781 IWLFGARHVY KNFFNKNKFV EYYQYVDFYN QLETRDNDDD KQVVAEIMAR SFIPTLITTV 840
  841 SWEGFHFAGH EIQITEGKDS YGAFVWPSAL VLCYFLETHA KQYNMVDKNV IEIGAGTGLV 900
  901 SIVASLLGAR VIATDLPELL GNLQYNISKN TKTKCKHLPQ VKELSWGVAL DRNFPRSSNN 960
  961 FDYILAADVV YAHPFLEELL MTFDHLCRET TIILWAMRFR LEKENKFVDK FKELFDLEEI1020
 1021 SSFPSLNIKL YKAMKKNWRR A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle