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Protein Overview: YK16_SCHPO

General Information:
Name(s) found: YK16_SCHPO [Swiss-Prot]
Description(s) found:
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  • gi|19114432|ref|NP_593520.1| hypothetical protein SPAPB1A10.06c [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • Putative ATP-dependent RNA helicase PB1A10.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB1A10.06c PE=3 SV=1 [Swiss-Prot]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 1183 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRLRKRFNE KGRQSGIQKM LNLKRARLHR SVREQESSSE VHANPEPDNQ DSNAEILIDV  60
   61 PKEERQKRKQ ELKDQLLKEN EGSISSKKKK RLDKYIENKL KKEEVASLIA KLAEERIDTS 120
  121 LLSSSKNLGK QATAKEKLKK SLLEEKLGLP LSDADSRLYK VVDVETTTTK SSTAETNAPE 180
  181 KYSTRSGFGF GFSTGTNESE ITPNIKVLPP KKKKNASWGK MLNEDPEYDS AEEDYLSTDS 240
  241 EEFSEDSDNS SEENKDTNEP STKDAEKTVP EDVVNLRSEQ KLQPSFGHPE FENEDFDLET 300
  301 SEDDSSDDAT ERASRFKSWA NKQILGADVG EKSHDVAPDN KIDNPDADMV RAQRMPRKLK 360
  361 MREEDVEPTA DDIEIKGRKT TYTIINRPPE IQESRLALPI VAEEQRIMEQ IFANDVVIIC 420
  421 GATGSGKTTQ LPQFLFEAGF SSPESENPGM IAITQPRRVA AVSIAKRVSE ELTGFSSKVS 480
  481 YQIRFDSTIN PDTAIKFMTD GILLRELSSD FLLTAYSAVI VDEAHERSVN TDILLGLLSR 540
  541 IVRLRREMSK SDQKVKPLKL IIMSATLRVT DFSENKLLFS VPPPIIKIDA RQYPVSIHFN 600
  601 RTTKPDYLQD AFDKVCLIHK RLPAGSILVF LTGQQEVEQL CQMLRKRFVR SFRPLKSRAR 660
  661 IVVSRKTMSV ENEDLQSETE DIDQVPTSSS SSVTYDDESE PMYVLPLYSL LTTEDQMKVF 720
  721 DSSPEGHRMC IVATNVAETS ITIPNIRYVV DCGKAKERVY NEKTSVQKFE VRWISKANAD 780
  781 QRAGRAGRTG PGHCYRLYSS AVFDSSFPLH SLPEILRTPV ESIVLQMKNM NIDNIANFPF 840
  841 PTSPGRSRLE KSLKLLSNLG AIDSEGVLTK LGEQMSLFPL SPRFSKMLII GQQHGCLPYV 900
  901 IALVSALSIN QLFVSKQSLL YDAHDKNSRS EETDLIDDDE IKQKEEYKNR MRGYFNAISR 960
  961 FQAIDPDAPA LSLLSAVCAY DYASDKRKFC KENYLREKAL EEVTNLRKQI IGLLKRYMVR1020
 1021 VEKEFFKLQL KPPTSVQIKA LRQFIASAYI DQVALYDKEK RGYVTLFPSG SEVVQFVPDR1080
 1081 TYNIDSEYVV YLSLHESRSG RVYMSPLTEI SPEHLARLAK NTTLLSYSKP LSYPPIRYLD1140
 1141 NATKRECWVI PILSANIGTG SPSWNLPAVQ IIQKRINGRW VNC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..65] PSI-BLAST 7.0 No description for 2i1jA was found.
    2 View Details [66..811] PSI-BLAST 17.39794 RecG, N-terminal domain; RecG "wedge" domain; RecG helicase domain
    3 View Details [812..1023] PSI-BLAST 35.154902 No description for 2p6rA was found.
    4 View Details [1024..1183] Pfam 16.21467 No description for PF07717.7 was found. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
    		• 4.704140727858 bayes_pls_golite062009
  • binding
    		•  2.44689197844883 bayes_pls_golite062009
  • RNA binding
    		•  2.29590582680214 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.57653963868443 bayes_pls_golite062009
  • RNA helicase activity
    		•  1.42791449104435 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.41477043612798 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  1.39335733374328 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  1.36724390116598 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  1.35850109411274 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  1.35845277283398 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  1.35845277283398 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  1.15212468568198 bayes_pls_golite062009
  • DNA binding
    		•  1.11699929651302 bayes_pls_golite062009
  • exoribonuclease activity
    		•  1.10445667068538 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.989226939888218 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  0.83268201349295 bayes_pls_golite062009
  • mRNA binding
    		•  0.76699944561918 bayes_pls_golite062009
  • helicase activity
    		•  0.6191010101321 bayes_pls_golite062009
  • motor activity
    		•  0.61636596887462 bayes_pls_golite062009
  • structural molecule activity
    		•  0.596382945962261 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.461763181659193 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.458831409927227 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.455976987338331 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.422944846459286 bayes_pls_golite062009
  • snRNA binding
    		•  0.418985924846052 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.338958888186454 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.29664013896754 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.29664013896754 bayes_pls_golite062009
  • translation release factor activity
    		•  0.178286731022211 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
    		•  0.151650064901878 bayes_pls_golite062009
  • translation termination factor activity
    		•  0.151456842619444 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  0.0740938021136293 bayes_pls_golite062009
  • RNA polymerase activity
    		•  0.0740938021136293 bayes_pls_golite062009
  • protein binding
    		•  0.071010918255742 bayes_pls_golite062009
  • transcription factor activity
    		•  0.0434163635422169 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.0272673919333979 bayes_pls_golite062009
    3
    Term Confidence Notes
    		• 6.55929165712784 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  3.40791872038512 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  3.40070584403887 bayes_pls_golite062009
  • RNA helicase activity
    		•  3.25446655280881 bayes_pls_golite062009
  • helicase activity
    		•  1.87693598354249 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  1.87127651162653 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  1.87127651162653 bayes_pls_golite062009
  • binding
    		•  1.77110118899161 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.19966274672886 bayes_pls_golite062009
  • catalytic activity
    		•  0.740488970089403 bayes_pls_golite062009
  • protein binding
    		•  0.345215015803321 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle