YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: JRKL

General Information:
Name(s) found: JRKL [HGNC (HUGO)]
Description(s) found:
Found 25 descriptions.
SHOW ALL
  • jerky homolog-like (mouse) [HGNC (HUGO)]
    • Organism: Homo sapiens
    Length: 524 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGKRKRVVL TIKDKLDIIK KLEDGGSSKQ LAVIYGIGET TVRDIRKNKE KIITYASSSD  60
   61 STSLLAKRKS MKPSMYEELD RAMLEWFNQQ RAKGNPISGP ICAKRAEFFF YALGMDGDFN 120
  121 PSAGWLTRFK QRHSIREINI RNERLNGDET AVEDFCNNFR DFIERENLQP EQIYNADETG 180
  181 LFWKCLPSRI SVIKGKCTVP GHKSIEERVT IMCCANATGL HKLKLCVVGK AKKPRSFKST 240
  241 DTLNLPVSYF SQKGAWMDLS IFRQWFDKIF VPQVREYLRS KGLQEKAVLL LDNSPTHPNE 300
  301 NVLRSDDGQI FAKYLPPNVA SLIQPSDQGV IATMKRNYRA GLLQNNLEEG NDLKSFWKKL 360
  361 TLLDALYEIA MAWNLVKPVT ISRAWKKILP MVEEKESLDF DVEDISVATV AAILQHTKGL 420
  421 ENVTTENLEK WLEVDSTEPG YEVLTDSEII RRAQGQADES SENEEEEIEL IPEKHINHAA 480
  481 ALQWTENLLD YLEQQGDMIL PDRLVIRKLR ATIRNKQKMT KSSQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..148] PSI-BLAST 20.69897 DNA-binding domain of centromere binding protein B (CENP-B)
    2 View Details [149..392] FFAS03 1.81 No description for 2f7tA was found.
    3 View Details [393..524] MSA 2.175986 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  2.71840976776163 bayes_pls_golite062009
  • DNA binding
    		•  2.61711182194361 bayes_pls_golite062009
  • binding
    		•  2.59102816487173 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.3237599869447 bayes_pls_golite062009
  • transcription factor activity
    		•  2.18905180070231 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.69885241317809 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.35613772918036 bayes_pls_golite062009
  • protein binding
    		•  0.853351196918381 bayes_pls_golite062009
  • transcription activator activity
    		•  0.67940033960016 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.67392957114349 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.44172618015361 bayes_pls_golite062009
  • transcription factor binding
    		•  0.22865859991459 bayes_pls_golite062009
  • chromatin binding
    		•  0.203837749053719 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle