| Protein: | JRKL |
| Organism: | Homo sapiens |
| Length: | 524 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for JRKL.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..524] | [1..524] |
|
|
0.0 | [1..524] | [1..523] |
|
|
0.0 | [1..524] | [1..524] |
|
|
0.0 | [1..524] | [1..524] |
|
|
0.0 | [1..524] | [1..524] |
|
|
0.0 | [1..521] | [1..521] |
|
Region A: Residues: [1-148] |
1 11 21 31 41 51
| | | | | |
1 MSGKRKRVVL TIKDKLDIIK KLEDGGSSKQ LAVIYGIGET TVRDIRKNKE KIITYASSSD 60
61 STSLLAKRKS MKPSMYEELD RAMLEWFNQQ RAKGNPISGP ICAKRAEFFF YALGMDGDFN 120
121 PSAGWLTRFK QRHSIREINI RNERLNGD
|
| Detection Method: |  |
| Confidence: | 20.69897 |
| Match: | 1hlvA |
| Description: | DNA-binding domain of centromere binding protein B (CENP-B) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 2.71840976776163 | bayes_pls_golite062009 |
| DNA binding | 2.61711182194361 | bayes_pls_golite062009 |
| binding | 2.59102816487173 | bayes_pls_golite062009 |
| nucleic acid binding | 2.3237599869447 | bayes_pls_golite062009 |
| transcription factor activity | 2.18905180070231 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.69885241317809 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.35613772918036 | bayes_pls_golite062009 |
| protein binding | 0.853351196918381 | bayes_pls_golite062009 |
| transcription activator activity | 0.67940033960016 | bayes_pls_golite062009 |
| transcription repressor activity | 0.67392957114349 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.44172618015361 | bayes_pls_golite062009 |
| transcription factor binding | 0.22865859991459 | bayes_pls_golite062009 |
| chromatin binding | 0.203837749053719 | bayes_pls_golite062009 |
|
Region A: Residues: [149-392] |
1 11 21 31 41 51
| | | | | |
1 ETAVEDFCNN FRDFIERENL QPEQIYNADE TGLFWKCLPS RISVIKGKCT VPGHKSIEER 60
61 VTIMCCANAT GLHKLKLCVV GKAKKPRSFK STDTLNLPVS YFSQKGAWMD LSIFRQWFDK 120
121 IFVPQVREYL RSKGLQEKAV LLLDNSPTHP NENVLRSDDG QIFAKYLPPN VASLIQPSDQ 180
181 GVIATMKRNY RAGLLQNNLE EGNDLKSFWK KLTLLDALYE IAMAWNLVKP VTISRAWKKI 240
241 LPMV
|
| Detection Method: | |
| Confidence: | 1.81 |
| Match: | 2f7tA |
| Description: | No description for 2f7tA was found. |
|
Region A: Residues: [393-524] |
1 11 21 31 41 51
| | | | | |
1 EEKESLDFDV EDISVATVAA ILQHTKGLEN VTTENLEKWL EVDSTEPGYE VLTDSEIIRR 60
61 AQGQADESSE NEEEEIELIP EKHINHAAAL QWTENLLDYL EQQGDMILPD RLVIRKLRAT 120
121 IRNKQKMTKS SQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
