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Protein Overview: TIGD1

General Information:
Name(s) found: TIGD1 [HGNC (HUGO)]
Description(s) found:
Found 33 descriptions.
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  • tigger transposable element derived 1 [HGNC (HUGO)]
    • Organism: Homo sapiens
    Length: 591 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKCSSERK SRTSLTLNQK LEMIKLSEEG MSKAEIGRRL GLLRQTVSQV VNAKEKFLKE  60
   61 VKSATPMNTR MIRKRNSLIA DMEKVLVVWI EDQTSRNIPL SQSLIQNKAL TLFNSMKAER 120
  121 GVEAAEEKFE ASRGWFMRFK ERSHFHNIKA QGEAASADVE AAASYPEALA KIIDEGGYTK 180
  181 QQIFNVDETA FYWKKMPSRT FIAREEKSVP GFKASKDRLT LLLGANAAGD FKLKPMLIYH 240
  241 SENPRALKNY TKSTLPVLYK WNSKARMTAH LFTAWFTEYF KPTVETYCSE KKIPFKILLL 300
  301 IDNAPSHPRA LMEIYEEINV IFMPANTTSI LQPMDQGVIS TFKSYYLRNT FHKALAAMDS 360
  361 DVSDGSGQSK LKTFWKGFTI LDAIKNIRDS WEEVKLSTLT GVWKKLIPTL IDDYEGFKTS 420
  421 VEEVSADVVE IAKELELEVE PEDVTELLQS HDKTLTDEEL FLMDAQRKWF LEMESTPGED 480
  481 AVNIVEMTTK DLEYYINLVD KAAAGFERID SNFERSSTVG KMLSNSIACY REIFHERKSQ 540
  541 LMRKASPMSY FRKLPQPPQP SAATTLTSQQ PSTSRQDPPP AKRVRLTEGS D

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run gi|14317902, gi|... No Comments Cheeseman, I.M., et al. (2004)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..157] PSI-BLAST 21.69897 DNA-binding domain of centromere binding protein B (CENP-B)
    2 View Details [158..419] FFAS03 1.52 No description for 2f7tA was found.
    3 View Details [420..591] MSA 4.152988 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  2.71840976776163 bayes_pls_golite062009
  • DNA binding
    		•  2.61711182194361 bayes_pls_golite062009
  • binding
    		•  2.59102816487173 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.3237599869447 bayes_pls_golite062009
  • transcription factor activity
    		•  2.18905180070231 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.69885241317809 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.35613772918036 bayes_pls_golite062009
  • protein binding
    		•  0.853351196918381 bayes_pls_golite062009
  • transcription activator activity
    		•  0.67940033960016 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.67392957114349 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.44172618015361 bayes_pls_golite062009
  • transcription factor binding
    		•  0.22865859991459 bayes_pls_golite062009
  • chromatin binding
    		•  0.203837749053719 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle