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Protein Overview: YPR204W

General Information:
Name(s) found: YPR204W [SGD]
Description(s) found:
Found 23 descriptions.
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  • Helicase-like protein encoded within the telomeric Y' element [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 1032 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: DNA helicase activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADTPSVAVQ APPGYGKTEL FHLPLIALAS KGDVKYVSFL FVPYTVLLAN CMIRLGRCGC  60
   61 LNVAPVRNFI EEGCDGVTDL YVGIYDDLAS TNFTDRIAAW ENIVECTFRT NNVKLGYLIV 120
  121 DEFHNFETEV YRQSQFGGIT NLDFDAFEKA IFLSGTAPEA VADAALQRIG LTGLAKKSMD 180
  181 INELKRSEDL SRGLSSYPTR MFNLIKEKSE VPLGHVHKIW KKVESQPEEA LKLLLALFEI 240
  241 EPESKAIVVA STTNEVEELA CSWRKYFRVV WIHGKLGAAE KVSRTKEFVT DGSMRVLIGT 300
  301 KLVTEGIDIK QLMMVIMLDN RLNIIELIQG VGRLRDGGLC YLLSRKNSWA ARNRKGELPP 360
  361 IKEGCITEQV REFYGLESKK GKKGQHVGCC GSRTDLSADT VELIERMDRL AEKQATASMS 420
  421 IVALPSSFQE SNSSDRCRKY CSSDEDSNTC IHGSANASTN ATTNSSTNAT TTASTNVRTS 480
  481 ATTTASINVR TSATTTESTN SSTNATTTAS TNVRTSATTT ASINVRTSAT TTESTNSNTS 540
  541 ATTTESTDSN TSATTTESTN SSTNATTTAS INVRTSATTT ESTNSNTNAT TTESTNSSTN 600
  601 ATTTEGTNSN TSATTTASTN SSTNATTTES TNASAKEDAN KDGNAEDNRF HPVTDINKES 660
  661 YKRKGSQMVL LERKKLKAQF PNTSENMNVL QFLGFRSDEI KHLFLYGIDV YFCPEGVFTQ 720
  721 YGLCKGCQKM FELCVCWAGQ KVSYRRMAWE ALAVERMLRN DEEYKEYLED IEPYHGDPVG 780
  781 YLKYFSVKRG EIYSQIQRNY AWYLAITRRR ETISVLDSTR GKQGSQVFRM SGRQIKELYY 840
  841 KVWSNLRESK TEVLQYFLNW DEKKCREEWE AKDDTVFVEA LEKVGVFQRL RSMTSAGLQG 900
  901 PQYVKLQFSR HHRQLRSRYE LSLGMHLRDQ LALGVTPSKV PHWTAFLSML IGLFCNKTFR 960
  961 QKLEYLLEQI SEVWLLPHWL DLANVEVLAA DNTRVPLYML MVAVHKELDS DDVPDGRFDI1020
 1021 LLCRDSSREV GE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..392] PSI-BLAST 146.69897 Initiation factor 4a
    2 View Details [393..738] MSA 66.608997 View MSA. No confident structure predictions are available.
    3 View Details [739..1032] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.36550713198424 bayes_pls_golite062009
  • catalytic activity
    		•  0.234613562021476 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.166100211611062 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.159702441149605 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.149170905385965 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.147838751017739 bayes_pls_golite062009
  • hydrolase activity
    		•  0.0436758932827116 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.84

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle