Protein Overview: RSA1

General Information:
Name(s) found:	RSA1 / YPL193W [SGD]
Description(s) found: SHOW ONLY BEST	gi\|8928341\|sp\|Q08932.1\|RSA1_YEAST RecName: Full=Ribosome assembly 1 protein [NCBI NR] gi\|6325063\|ref\|NP_015131.1\| Protein involved in the assembly of 60S ribosomal subunits; functionally interacts with Dbp6p; functions in a late nucleoplasmic step of the assembly; Rsa1p [Saccharomyces cerevisiae] [NCBI NR] pir\|\|S65212 hypothetical protein YPL193w - yeast (Saccharomyces cerevisiae) [NCBI NR] gi\|1370403\|emb\|CAA97906.1\| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR] Ribosome assembly 1 protein OS=Saccharomyces cerevisiae GN=RSA1 PE=1 SV=1 [Swiss-Prot] RSA1 Nucleoplasmic protein involved in assembly of 60S ribosomal subunits [mips] Protein involved in the assembly of 60S ribosomal subunits; functionally interacts with Dbp6p; functions in a late nucleoplasmic step of the assembly [SGD] (Q08932) Ribosome assembly 1 protein [4932.FASTACCERV.txt] Chr XVI from 181402-182547 [hmr_yeast5_DM3-1_pombe.fasta] RSA1, Chr XVI from 181402-182547 [yeast_orfs2] RSA1 SGDID:S0006114, Chr XVI from 181402-182547, Verified ORF [yeastflysequest.fasta] RiboSome Assembly [Saccharomyces cerevisiae]gi\|1370403\|emb\|CAA97906.1\| unnamed protein product [Saccharomyces cerevisiae]gi\|8928341\|sp\|Q08932\|RSA1_YEAST Ribosome assembly 1 proteingi\|2132225\|pir\|\|S65212 hypothetical protein YPL193w - yeast (Saccharomyc [nrdb_11152004_Chlamydomonas] RSA1 SGDID:S000006114, Chr XVI from 181402-182547, Verified ORF, "Protein involved in the assembly of 60S ribosomal subunits; functionally interacts with Dbp6p; functions in a late nucleoplasmic step of the assembly" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] Protein involved in the assembly of 60S ribosomal subunits; functionally interacts with Dbp6p; functions in a late nucleoplasmic step of the assembly; Rsa1p [Saccharomyces cerevisiae] [nr-271106-contam.fasta] unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta] Ribosome assembly 1 protein [nr-271106-contam.fasta] [chemostatdb.fasta] Ribosome assembly 1 protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSA1 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta] RSA1 SGDID:S000006114, Chr XVI from 181403-182548, Genome Release 64-1-1, Verified ORF, "Protein involved in the assembly of 60S ribosomal subunits; functionally interacts with Dbp6p; functions in a late nucleoplasmic step of the assembly" [yeast-030211-contam.fasta] RSA1 SGDID:S000006114, Chr XVI from 181403-182548, Genome Release 64-2-1, Verified ORF, "Protein involved in the assembly of 60S ribosomal subunits; functionally interacts with Dbp6p; functions in a late nucleoplasmic step of the assembly" [20141208_orf_trans.fasta] YPL193W SGDID:S000006114, Chr XVI from 181403-182548, Genome Release 64-1-1, Verified ORF, "Protein involved in the assembly of 60S ribosomal subunits; functionally interacts with Dbp6p; functions in a late nucleoplasmic step of the assembly" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
Organism:	Saccharomyces cerevisiae
Length:	381 amino acids
Gene Ontology:
Cellular Component:	nucleoplasm [IDA]
Biological Process:	telomere maintenance [IMP] ribosomal large subunit assembly [IMP]
Molecular Function:	molecular_function [ND]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYNNFENSK GDGHSRLPKP TYSGTLSDGY DESKIKRQKT DSAFNAAYSP HMYPNSPYYE  60
   61 GSWNTGYTPQ LHHVAPHNQY FHPIQPSTQY NYTSPPNYTE NYIPPVHQNI SYAPALNLQK 120
  121 WPSSYCENTQ ALKNDKDYQT SISYEDVAIP TVKEIQLIEK NRGKDTFMNE ISPVPSSKDQ 180
  181 ASAEPTEIPR KDPELANSNA EDDHNNLGLE DDDRDEQLES EGLGKVVLVP GTSIALITDE 240
  241 DVKKWREERK KMWLLKISNN KQKHMQEMGI KEDELKSQPS IFKESRKEKQ FIQSIQNQVQ 300
  301 RGNPKIDLNL KLIQREFANE NSQLLDFIRE LGDVGLLEYE LSQQEKDVLF GSSEDNNKNH 360
  361 YKPNYKNRKP NLSRANFTRN K

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	NSE3	No Comments	Hazbun TR, et al. (2003)
View Run	RPA135	No Comments	Schneider, DA, et al. (2006)

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

	BAIT	PREY	HITS	PUBLICATION
View Screen	TEP1	RSA1	2	Unpublished Fields Lab Data
View Screen	YPT1	RSA1	1	Unpublished Fields Lab Data
View Screen	PXR1	RSA1	1	Unpublished Fields Lab Data
View Screen	IRE1	RSA1	1	Unpublished Fields Lab Data
View Screen	IRE1	RSA1	1	Unpublished Fields Lab Data
View Screen	CTF3	RSA1	1	Unpublished Fields Lab Data
View Screen	YNL260C	RSA1	1	Unpublished Fields Lab Data
View Screen	PDR17	RSA1	1	Unpublished Fields Lab Data
View Screen	RAD1	RSA1	1	Unpublished Fields Lab Data

Microscopy / Localization Data

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	PROTEIN(S)	PUBLICATION
View Data	RSA1	Huh WK, et al. (2003)

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..381]	deduced	N/A	No confident structure predictions are available.

Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2