YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: YRF1-8

General Information:
Name(s) found: YRF1-8 / YOR396W [SGD]
Description(s) found:
SHOW ONLY BEST
  • gi|9755360|ref|NP_061495.1| hypothetical protein; Yor396wp [Saccharomyces cerevisiae] [NCBI NR]
  • Conserved hypothetical protein - identified by homology [mips]
  • One of several telomeric Y' element-encoded DNA helicases, known as Y'-Help1 (Y'-HELicase Protein 1) [SGD]
  • Chr XV from 1087183-1090857 [hmr_yeast5_DM3-1_pombe.fasta]
  • Chr XV from 1087182-1090856 [yeastorf3.fasta]
  • YOR396W, Chr XV from 1087182-1090856 [yeast_orfs2]
  • YOR396W SGDID:S0007526, Chr XV from 1087185-1090859, Uncharacterized ORF [yeastflysequest.fasta]
  • Yor396wp [Saccharomyces cerevisiae] [nrdb_11152004_Chlamydomonas]
  • YOR396W SGDID:S000007526, Chr XV from 1087185-1090859, Uncharacterized ORF, "Hypothetical protein" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • YOR396W SGDID:S000007526, Chr XV from 1087187-1090861, Uncharacterized ORF, "Hypothetical protein" [yeast-contam.fasta]
  • hypothetical protein; Yor396wp [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 1224 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: helicase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQICALGNSY DAFNHDPWMD VVGFEDPDQV TNRDISRIVL YSYMFLNTAK GCLVEYATFR  60
   61 QYMRELPKNA PQKLNFREMR QGLIALGRHC VGSRFETDLY ESATSELMAN HSVQTGRNIY 120
  121 GVDSFSLTSV SGTTATLLQE RASERWIQWL GLESDYHCSF SSTRNAEDVV AGEAASSDHD 180
  181 QKISRVTRKR PREPKSTNDI LVAGQKLFGS SFEFRDLHQL RLCHEIYMAD TPSVAVQAPP 240
  241 GYGKTELFHL PLIALASKGD VKYVSFLFVP YTVLLANCMI RLSRCGCLNV APVRNFIEEG 300
  301 CDGVTDLYVG IYDDLASTNF TDRIAAWENI VECTFRTNNV KLGYLIVDEF HNFETEVYRQ 360
  361 SQFGGITNLD FDAFEKAIFL SGTAPEAVAD AALQRIGLTG LAKKSMDINE LKRSEDLSRG 420
  421 LSSYPTRMFN LIKEKSEVPL GHVHKIWKKV ESQPEEALKL LLALFEIEPE SKAIVVASTT 480
  481 NEVEELACSW RKYFRVVWIH GKLGAAEKVS RTKEFVTDGS MRVLIGTKLV TEGIDIKQLM 540
  541 MVIMLDNRLN IIELIQGVGR LRDGGLCYLL SRKNSWAARN RKGELPPIKE GCITEQVREF 600
  601 YGLESKKGKK GQHVGCCGSR TDLSADTVEL IERMDRLAEK QATASMSIIA LPSSFQESNS 660
  661 SDRCRKYCSS DEDSDTCIHG SANASTNATT NSSTNATTTA STNVRTSATT TASINVRTSA 720
  721 ITTESTNSST NATTTASTNV RTSATTTASI NVRTSATTTE STNSNTSATT TESTDSNTSA 780
  781 TTTESTDSNT SATTTASTNS STNATTTAST NSSTNATTTE STNASAKEDA NKDGNAEDNR 840
  841 FHPVTDINKE SYKRKGSQMV LLERKKLKAQ FPNTSENMNV LQFLGFRSDE IKHLFLYGID 900
  901 VYFCPEGVFT QYGLCKGCQK MFELCVCWAG QKVSYRRMAW EALAVERMLR NDEEYKEYLE 960
  961 DIEPYHGDPV GYLKYFSVKR GEIYSQIQRN YAWYLAITRR RETISVLDST RGKQGSQVFR1020
 1021 MSGRQIKELY YKVWSNLRES KTEVLQYFLN WDEKKCREEW EAKDDTVFVE ALEKVGVFQR1080
 1081 LRSMTSAGLQ GPQYVKLQFS RHHRQLRSRY ELSLGMHLRD QLALGVTPSK VPHWTAFLSM1140
 1141 LIGLFYNKTF RQKLEYLLEQ ISEVWLLPHW LDLANVEVLA ADNTRVPLYM LMVAVHKELD1200
 1201 SDDVPDGRFD IILLCRDSSR EVGE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..134] deduced N/A No confident structure predictions are available.
    2 View Details [135..599] PSI-BLAST 97.39794 No description for 2j0qA was found.
    3 View Details [600..892] MSA 4.363994 View MSA. No confident structure predictions are available.
    4 View Details [893..1130] deduced N/A No confident structure predictions are available.
    5 View Details [1131..1224] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.36550713198424 bayes_pls_golite062009
  • catalytic activity
    		•  0.234613562021476 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.166100211611062 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.159702441149605 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.149170905385965 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.147838751017739 bayes_pls_golite062009
  • hydrolase activity
    		•  0.0436758932827116 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle