YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: RRG9

General Information:
Name(s) found: RRG9 / YNL213C [SGD]
Description(s) found:
Found 29 descriptions.
SHOW ALL
  • Protein of unknown function; null mutant lacks mitochondrial DNA and cannot grow on glycerol; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 214 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: mitochondrion organization [IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILRIACRS FHCLRCGPLL NENRGWSSKK IIKLVNKSSL SNKEFTEKVR DGTKDIPEWK  60
   61 KQKMAVRKKL QGQRWNPPKK ISQEQMEALR LLKFNFPELT ASDLADRFKI SPEAVRRILK 120
  121 SNWKRTDEEN NNTYERWKRR GERIKEMYQR KEDADFVSNQ IVTSRKIILG SNSNSPELIA 180
  181 RNVRTFKPFK PNNSTPEKKN TNKLYILKHL GSKQ

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Ho Y, et al. (2002) GCN2 RRG9

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen RIM11 RRG9 1 Unpublished Fields Lab Data
    View Screen NAF1 RRG9 1 Hazbun TR, et al. (2003)

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data RRG9 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..148] MSA 3.005983 View MSA. No confident structure predictions are available.
    2 View Details [149..214] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  3.52037235769064 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.26601886211701 bayes_pls_golite062009
  • DNA binding
    		•  3.24659040730132 bayes_pls_golite062009
  • transcription factor activity
    		•  2.70611942641509 bayes_pls_golite062009
  • binding
    		•  1.78064857180719 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.51287971227547 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.34461031960924 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.02090023542008 bayes_pls_golite062009
  • transcription activator activity
    		•  0.9113397633272 bayes_pls_golite062009
  • catalytic activity
    		•  0.794231598246996 bayes_pls_golite062009
  • protein binding
    		•  0.64696728529788 bayes_pls_golite062009
  • transcription factor binding
    		•  0.525225093153448 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.134558516082252 bayes_pls_golite062009
  • chromatin binding
    		•  0.0850288412922495 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.043605800048317 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle