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Protein Overview: FCP1

General Information:
Name(s) found: FCP1 / YMR277W [SGD]
Description(s) found:
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  • gi|825543|emb|CAA89775.1| unknown [Saccharomyces cerevisiae] [NCBI NR]
  • gi|6323933|ref|NP_014004.1| Carboxy-terminal domain (CTD) phosphatase, essential for dephosphorylation of the repeated C-terminal domain of the RNA polymerase II large subunit (Rpo21p); Fcp1p [Saccharomyces cerevisiae] [NCBI NR]
  • gi|2497216|sp|Q03254.1|FCP1_YEAST RecName: Full=RNA polymerase II subunit A C-terminal domain phosphatase; AltName: Full=CTD phosphatase FCP1 [NCBI NR]
  • pir||S54584 hypothetical protein YMR277w - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • RNA polymerase II subunit A C-terminal domain phosphatase OS=Saccharomyces cerevisiae GN=FCP1 PE=1 SV=1 [Swiss-Prot]
  • FCP1 TFIIF interacting component of CTD phosphatase [mips]
  • Carboxy-terminal domain (CTD) phosphatase, essential for dephosphorylation of the repeated C-terminal domain of the RNA polymerase II large subunit (Rpo21p) [SGD]
  • FCP1, Chr XIII from 820256-822454 [yeast_orfs2]
  • Chr XIII from 820256-822454 [yeastorf3.fasta]
  • (Q03254) Hypothetical 83.4 kDa protein in DSK2-CAT8 intergenic region [4932.FASTACCERV.txt]
  • FCP1 SGDID:S0004890, Chr XIII from 820255-822453, Verified ORF [yeastflysequest.fasta]
  • Carboxy-terminal domain (CTD) phosphatase, essential for dephosphorylation of the repeated C-terminal domain of the RNA polymerase II large subunit (Rpo21p) [Saccharomyces cerevisiae]gi|825543|emb|CAA89775.1| unknown [Saccharomyces cerevisiae]gi|1078533 [nrdb_11152004_Chlamydomonas]
  • (Q03254) RNA polymerase II subunit A C-terminal domain phosphatase (EC 3.1.3.16) (CTD phosphatase FCP1) [cerv4932.FASTAC]
  • FCP1 SGDID:S000004890, Chr XIII from 820255-822453, Verified ORF, "Carboxy-terminal domain (CTD) phosphatase, essential for dephosphorylation of the repeated C-terminal domain of the RNA polymerase II large subunit (Rpo21p)" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • unknown [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Carboxy-terminal domain (CTD) phosphatase, essential for dephosphorylation of the repeated C-terminal domain of the RNA polymerase II large subunit (Rpo21p); Fcp1p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • RNA polymerase II subunit A C-terminal domain phosphatase (CTD phosphatase FCP1) [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • RNA polymerase II subunit A C-terminal domain phosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCP1 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • FCP1 SGDID:S000004890, Chr XIII from 820256-822454, Genome Release 64-1-1, Verified ORF, "Carboxy-terminal domain (CTD) phosphatase, essential for dephosphorylation of the repeated C-terminal domain of the RNA polymerase II large subunit (Rpo21p)" [yeast-030211-contam.fasta]
  • FCP1 SGDID:S000004890, Chr XIII from 820256-822454, Genome Release 64-2-1, Verified ORF, "Carboxy-terminal domain (CTD) phosphatase; essential for dephosphorylation of the repeated C-terminal domain of the RNA polymerase II large subunit (Rpo21p); relocalizes to the cytosol in response to hypoxia" [20141208_orf_trans.fasta]
  • TR5228|c0_g1_i1|g.3592 ORF TR5228|c0_g1_i1|g.3592 TR5228|c0_g1_i1|m.3592 type:complete len:733 (+) TR5228|c0_g1_i1:121-2319(+) [Y12_S_cerevisiae-Sep2015-contam.fasta]
  • YMR277W SGDID:S000004890, Chr XIII from 820256-822454, Genome Release 64-1-1, Verified ORF, "Carboxy-terminal domain (CTD) phosphatase, essential for dephosphorylation of the repeated C-terminal domain of the RNA polymerase II large subunit (Rpo21p)" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
  • ID=asmbl_4215|g.2339 ORF ID=asmbl_4215|g.2339 ID=asmbl_4215|m.2339 type:complete len:733 (+) ID=asmbl_4215:159-2357(+) [Y12_quiver_Trinity_v2_2_0_PASA_2June2016-contam.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 732 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IPILink to PubMed article]
    Biological Process: transcription [IMPLink to PubMed article]
    protein amino acid dephosphorylation [IDALink to PubMed article]
    Molecular Function: phosphoprotein phosphatase activity [IDALink to PubMed article]
    phosphatase activity [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTQIRSPQG LPYPIQIDKL IPSVGSYLHE GDRLLVYKFW YLVERASDTG DDDNEHDVSP  60
   61 GGSAGSNGVS PPTKQLRESI EFFESPYEGD LISWNVDVGD EVATANQVIC EIKRPCNHDI 120
  121 VYGGLCTQCG KEVSADAFDG VPLDVVGDVD LQISETEAIR TGKALKEHLR RDKKLILVVD 180
  181 LDQTIIHCGV DPTIAEWKND PNNPNFETLR DVKSFTLDEE LVLPLMYMND DGSMLRPPPV 240
  241 RKCWYYVKVR PGLKEFFAKV APLFEMHIYT MATRAYALQI AKIVDPTGEL FGDRILSRDE 300
  301 NGSLTTKSLA KLFPTDQSMV VVIDDRGDVW NWCPNLIKVV PYNFFVGVGD INSNFLPKQS 360
  361 TGMLQLGRKT RQKSQESQEL LTDIMDNEKK LQEKIDKEVK RQEEKLNHQL ATAEEPPANE 420
  421 SKEELTKKLE YSASLEVQQQ NRPLAKLQKH LHDQKLLVDD DDELYYLMGT LSNIHKTYYD 480
  481 MLSQQNEPEP NLMEIIPSLK QKVFQNCYFV FSGLIPLGTD IQRSDIVIWT STFGATSTPD 540
  541 IDYLTTHLIT KNPSTYKARL AKKFNPQIKI VHPDWIFECL VNWKKVDEKP YTLIVDSPIS 600
  601 DEELQNFQTQ LQKRQEYLEE TQEQQHMLTS QENLNLFAAG TSWLNNDDDE DIPDTASDDD 660
  661 EDDDHDDESD DENNSEGIDR KRSIEDNHDD TSQKKTKAEP SQDGPVQHKG EGDDNEDSDS 720
  721 QLEEELMDML DD

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) DDR48 FCP1 IDP1 YMR118C ZEO1

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data FCP1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..138] deduced N/A No confident structure predictions are available.
    2 View Details [139..415] Pfam 9.886057 NLI interacting factor-like phosphatase No confident structure predictions are available.
    3 View Details [416..489] deduced N/A No confident structure predictions are available.
    4 View Details [490..641] PSI-BLAST 12.522879 Breast cancer associated protein, BRCA1
    5 View Details [642..732] MSA 1.045991 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle