YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: YMR253C

General Information:
Name(s) found: YMR253C [SGD]
Description(s) found:
Found 23 descriptions.
SHOW ALL
  • Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; YMR253C is not an essential gene [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 414 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPSVPKVMK RENNTHLLVS KEMNDTSLQL PSTTRSLSPK ESNSNEDFNV DGNETTLQRI  60
   61 SKDYLKPNIG LVLLTVSYFF NSAMVVSTKV LENDPDDIAN DRQIKPLQIL LVRMVITYIG 120
  121 TLIYMYINKS TISDVPFGKP EVRKWLVLRG CTGFFGVFGM YYSLMYLTIS DAVLITFLAP 180
  181 SLTIFLSWVI LRERFTKVEA LGSLISLLGV VLIVRPSFLF GTPELTDSSS QIVESSDPKS 240
  241 RLIATLVGLW GVLGMSCVYI IIRYIGKRAH AIMSVSYFSL ITAIVSFIGI NTIPSMKFQI 300
  301 PHSKKQWILF GNLGVSGFIF QLLLTMGIQR ERAGRGSLMT YTQLLYAVFW DVALYKHWPN 360
  361 IWSWIGMIII ISATLWVIRI RAANNETTAK DLTPIIDDEE NSIPLTEFDL SDSK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #25 Asynchronous Prep3-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data YMR253C and COP1 Huh WK, et al. (2003)
    View Data YMR253C Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..53] deduced N/A No confident structure predictions are available.
    2 View Details [54..229] Pfam 14.327902 Integral membrane protein DUF6 No confident structure predictions are available.
    3 View Details [230..414] Pfam 11.004365 Integral membrane protein DUF6 No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle