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Protein Overview: YMR187C

General Information:
Name(s) found: YMR187C [SGD]
Description(s) found:
Found 23 descriptions.
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  • Putative protein of unknown function; YMR187C is not an essential gene [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 431 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPPHFFLSL IKKRCICWIC LEESTYDSTW LQHTCGCNLQ IHKRCYIRWL YQMHVELFLP  60
   61 NTVDLPKDAD LPIITCLKCL VDGHHDFMTT FSLTEIWETR PIWGQKSVPF QNDYVFNLMS 120
  121 LYTKRDNHPP YVLVKFGECP QCKKTNFIKR PTVTIQSSVL SLFYQWQKIT RYVIPLGITS 180
  181 LFLLNPEKTS FDIGLWQLRC LFPENVLRNM LNISTTKALD VYAQTERGLL SIPLTSSIII 240
  241 YGFIHYLSNI SNVSANAILF KWVYLSIVKT AGNKYYKGIG LPKIILYSNL ATFCYNFTFK 300
  301 RLVDLIYRRL INKGGKYLYH GNFENSSNSV PAEEFFIRRN WYAILAEKIL WPFVGKCTGG 360
  361 LLLNAFLWIQ RKFKIEWTPN CSPSEFRMIF NIIGCGTAAI GWSSLKLYAS YKRCQELEKI 420
  421 NEFIEQSCKG E

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) MMS22 YMR187C

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..431] deduced N/A No confident structure predictions are available.
    2 View Details [186..279] deduced N/A No confident structure predictions are available.
    3 View Details [280..431] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • small conjugating protein ligase activity
    		•  1.28910297643868 bayes_pls_golite062009
  • binding
    		•  1.21492492554694 bayes_pls_golite062009
  • protein binding
    		•  1.21418691323491 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  1.14183892709323 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.423289331607502 bayes_pls_golite062009
  • catalytic activity
    		•  0.168711389690753 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle