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View Structure Prediction Details

Protein: YMR187C
Organism: Saccharomyces cerevisiae
Length: 431 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR187C.

Description E-value Query
Range
Subject
Range
YMR187C - Putative protein of unknown function; YMR187C is not an essential gene
YM49_YEAST - Uncharacterized protein YMR187C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR187C ...
0.0 [1..431] [1..431]

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Predicted Domain #1
Region A:
Residues: [1-431]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPPHFFLSL IKKRCICWIC LEESTYDSTW LQHTCGCNLQ IHKRCYIRWL YQMHVELFLP  60
   61 NTVDLPKDAD LPIITCLKCL VDGHHDFMTT FSLTEIWETR PIWGQKSVPF QNDYVFNLMS 120
  121 LYTKRDNHPP YVLVKFGECP QCKKTNFIKR PTVTIQSSVL SLFYQWQKIT RYVIPLGITS 180
  181 LFLLNPEKTS FDIGLWQLRC LFPENVLRNM LNISTTKALD VYAQTERGLL SIPLTSSIII 240
  241 YGFIHYLSNI SNVSANAILF KWVYLSIVKT AGNKYYKGIG LPKIILYSNL ATFCYNFTFK 300
  301 RLVDLIYRRL INKGGKYLYH GNFENSSNSV PAEEFFIRRN WYAILAEKIL WPFVGKCTGG 360
  361 LLLNAFLWIQ RKFKIEWTPN CSPSEFRMIF NIIGCGTAAI GWSSLKLYAS YKRCQELEKI 420
  421 NEFIEQSCKG E

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term Confidence Notes
small conjugating protein ligase activity 1.28910297643868 bayes_pls_golite062009
binding 1.21492492554694 bayes_pls_golite062009
protein binding 1.21418691323491 bayes_pls_golite062009
ubiquitin-protein ligase activity 1.14183892709323 bayes_pls_golite062009
acid-amino acid ligase activity 0.423289331607502 bayes_pls_golite062009
catalytic activity 0.168711389690753 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [186-279]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEKTSFDIGL WQLRCLFPEN VLRNMLNIST TKALDVYAQT ERGLLSIPLT SSIIIYGFIH  60
   61 YLSNISNVSA NAILFKWVYL SIVKTAGNKY YKGI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [280-431]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLPKIILYSN LATFCYNFTF KRLVDLIYRR LINKGGKYLY HGNFENSSNS VPAEEFFIRR  60
   61 NWYAILAEKI LWPFVGKCTG GLLLNAFLWI QRKFKIEWTP NCSPSEFRMI FNIIGCGTAA 120
  121 IGWSSLKLYA SYKRCQELEK INEFIEQSCK GE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle