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Protein Overview: MSS11

General Information:
Name(s) found: MSS11 / YMR164C [SGD]
Description(s) found:
Found 23 descriptions.
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  • Transcription factor involved in regulation of invasive growth and starch degradation; controls the activation of MUC1 and STA2 in response to nutritional signals [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 758 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ICLink to PubMed article]
    Biological Process: pseudohyphal growth [IGILink to PubMed article]
    starch catabolic process [IMPLink to PubMed article]
    positive regulation of transcription from RNA polymerase II promoter [IDALink to PubMed article]
    Molecular Function: specific RNA polymerase II transcription factor activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNTTNINTN ERSSNTDFSS APNIKGLNSH TQLQFDADSR VFVSDVMAKN SKQLLYAHIY  60
   61 NYLIKNNYWN SAAKFLSEAD LPLSRINGSA SGGKTSLNAS LKQGLMDIAS KGDIVSEDGL 120
  121 LPSKMLMDAN DTFLLEWWEI FQSLFNGDLE SGYQQDHNPL RERIIPILPA NSKSNMPSHF 180
  181 SNLPPNVIPP TQNSFPVSEE SFRPNGDGSN FNLNDPTNRN VSERFLSRTS GVYDKQNSAN 240
  241 FAPDTAINSD IAGQQYATIN LHKHFNDLQS PAQPQQSSQQ QIQQPQHQPQ HQPQQQQQQQ 300
  301 QQQQQQQQQQ QQQQQQQQQQ QQQHQQQQQT PYPIVNPQMV PHIPSENSHS TGLMPSVPPT 360
  361 NQQFNAQTQS SMFSDQQRFF QYQLHHQNQG QAPSFQQSQS GRFDDMNAMK MFFQQQALQQ 420
  421 NSLQQNLGNQ NYQSNTRNNT AEETTPTNDN NANGNSLLQE HIRARFNKMK TIPQQMKNQS 480
  481 TVANPVVSDI TSQQQYMHMM MQRMAANQQL QNSAFPPDTN RIAPANNTMP LQPGNMGSPV 540
  541 IENPGMRQTN PSGQNPMINM QPLYQNVSSA MHAFAPQQQF HLPQHYKTNT SVPQNDSTSV 600
  601 FPLPNNNNNN NNNNNNNNNN NSNNSNNNNN NNNNNNNSNN TPTVSQPSSK CTSSSSTTPN 660
  661 ITTTIQPKRK QRVGKTKTKE SRKVAAAQKV MKSKKLEQNG DSAATNFINV TPKDSGGKGT 720
  721 VKVQNSNSQQ QLNGSFSMDT ETFDIFNIGD FSPDLMDS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run MLP2 #27 Asynchronous Prep4-TiO2 Phosphopeptide enriched, Steps3-5 Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen HMT1 MSS11 1 Unpublished Fields Lab Data
    View Screen RAD51 MSS11 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data MSS11 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..237] deduced N/A No confident structure predictions are available.
    2 View Details [238..449] MSA 1.002995 View MSA. No confident structure predictions are available.
    3 View Details [450..699] MSA 2.004996 View MSA. No confident structure predictions are available.
    4 View Details [700..758] deduced N/A Confident ab initio structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle