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Protein Overview: YML082W

General Information:
Name(s) found: YML082W [SGD]
Description(s) found:
Found 22 descriptions.
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  • Putative protein predicted to have carbon-sulfur lyase activity; green fluorescent protein (GFP)-fusion protein localizes to the nucleus and the cytoplasm; YNML082W is not an essential gene [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 649 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    Biological Process: sulfur metabolic process [ISSLink to PubMed article]
    Molecular Function: carbon-sulfur lyase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSAQVATEL GQPIPLDTQH AVSVCFPTWK SVISYVEKDP KVLGCLKSGY PRFWIHPSIQ  60
   61 KLRDILIEKY AKENETCFCF PSYRVAKRCR EYVRRKCAHR NGKVRILQLA TAKPINEEQK 120
  121 TWKRECKIAV VFVDGAYENI LKQYWQYTGE IISSRLAEYV LHELFMVEKK SSPAEEKEYI 180
  181 EMRYGRNLNF AFADRAKELI KKRIATKVID KDEHDEEENY HFLAGNQDEQ DFQDTFLDSS 240
  241 LNEANHGEDH DGGISGEVDS QEEPHNGLVS TIPPEPIEMS TIEEEQSVEE DAGRCALRVC 300
  301 PERDVFLFPS GMASIFTAHR LLLQWDSLRL NRSRNGSDVT SSPPNKKTVI FGFPYADTLH 360
  361 VLQEFNETYF LGEGDESSMK ELTKILHSGE QILAVFIETP SNPLLKMGNL LELKRLSELF 420
  421 GFFIIIDETV GGIVNIDGLP FADIVCSSLT KTFSGDSNVI GGSMVLNPQS RVYEFASRFM 480
  481 QLEDEYEDLL WCEDAIYLER NSRDFIARTI RINYSTEYLL DKILKPHVGE NKLFKKIYYP 540
  541 NLTSKETLTN YDMVRCKKEG GYGGLFSLTF HDEDHAAAFY DNLKLNKGPS LGTNFTLAFP 600
  601 YTLMTYYHEL DMAEKFGVER NLLRISVGLE SQSILGKIFQ EAIDKTVEI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen RPL33A YML082W 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data YML082W Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..184] MSA 1.093935 View MSA. No confident structure predictions are available.
    2 View Details [185..509]
    [546..562]    		 PSI-BLAST 179.218487 Cystathionine gamma-synthase, CGS
    3 View Details [510..545]
    [563..649]    		 PSI-BLAST 179.218487 Cystathionine gamma-synthase, CGS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  2.29878871754893 bayes_pls_golite062009
  • L-aspartate:2-oxoglutarate aminotransferase activity
    		•  1.87460342369605 bayes_pls_golite062009
  • glycine dehydrogenase (decarboxylating) activity
    		•  1.80372125032222 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor
    		•  1.80372125032222 bayes_pls_golite062009
  • transferase activity
    		•  1.44093490824786 bayes_pls_golite062009
  • transferase activity, transferring nitrogenous groups
    		•  1.28316822767388 bayes_pls_golite062009
  • transaminase activity
    		•  1.24990480711889 bayes_pls_golite062009
  • carbon-sulfur lyase activity
    		•  0.698312655247044 bayes_pls_golite062009
  • cystathionine beta-lyase activity
    		•  0.6849039330512 bayes_pls_golite062009
  • cystathionine gamma-lyase activity
    		•  0.505859361763689 bayes_pls_golite062009
  • glycine hydroxymethyltransferase activity
    		•  0.271623203801431 bayes_pls_golite062009
  • O-phospho-L-serine:2-oxoglutarate aminotransferase activity
    		•  0.234399054481664 bayes_pls_golite062009
  • pyridoxal phosphate binding
    		•  0.16957228630576 bayes_pls_golite062009
  • vitamin B6 binding
    		•  0.16957228630576 bayes_pls_golite062009
  • adenosylmethionine-8-amino-7-oxononanoate transaminase activity
    		•  0.0669652799570574 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.013097682076602 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle