Protein Overview: BER1

General Information:
Name(s) found:	BER1 / YLR412W [SGD]
Description(s) found: Found 25 descriptions. SHOW ALL	Protein involved in microtubule-related processes, N-acetylation; GFP-fusion protein localizes to the cytoplasm and is induced in response to the DNA-damaging agent MMS; YLR412W is not an essential gene; similar to Arabidopsis SRR1 gene [SGD]
Organism:	Saccharomyces cerevisiae
Length:	274 amino acids
Gene Ontology:
Cellular Component:	cytoplasm [IDA]
Biological Process:	biological_process [ND]
Molecular Function:	molecular_function [ND]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFKASGTKF KKTGKKVVPA KAFEEIVQTN RDVLKKSAFL SDLLENLQPH LNNIKKIRCV  60
   61 AIGNFKEDFP ATYQFALLLE ITDYIKSEDE RDVVVSLYDP IFTKEEIQYL KSLGSKWLIE 120
  121 EEFSENDAID YESVLYFLPH APLDLTENIL SSQRPHLWLA NNMISHTDRY TKAKLCENYP 180
  181 NLSKLVHYLQ TNAPPEVKKA HDVDGFATFI PKRKRKNRNN SSKLKVTPSD IDYDSIAPKF 240
  241 KSCQILTDFD EGKYLKEKPW INSFSDLTLH AIEY

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	MLP2	#26 Asynchronous Prep4-TiO2 Phosphopeptide enriched, Steps1-2	Keck JM, et al. (2011)
View Run	None Entered	#17 Mitotic Prep3-TiO2 Phosphopeptide enrichment	Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

	BAIT	PREY	HITS	PUBLICATION
View Screen	SST2	BER1	1	Unpublished Fields Lab Data
View Screen	SPT21	BER1	1	Unpublished Fields Lab Data

Microscopy / Localization Data

New Feature: Upload Your Own Microscopy Data

	PROTEIN(S)	PUBLICATION
View Data	BER1	Huh WK, et al. (2003)

Protein Structure Data

[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..194]	MSA	3.006966	View MSA. No confident structure predictions are available.
2	View Details	[195..274]	deduced	N/A	No confident structure predictions are available.

Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2