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Protein Overview: YJR003C

General Information:
Name(s) found: YJR003C [SGD]
Description(s) found:
Found 19 descriptions.
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  • Putative protein of unknown function; detected in highly purified mitochondria in high-throughput studies; predicted to be involved in ribosome biogenesis [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 539 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed articleLink to PubMed article]
    Biological Process: ribosome biogenesis [RCALink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEFDESYFF KCLTANRHSI MLRSLHSAAT LSNKRFYSLI SHSNRKNIIK KLLRHPSFDP  60
   61 IRHHLPEDIT TIDPYSLSQN VIESLNKLEV PKKDAAMVHN MMIENLSDLD YGVATIHSNN 120
  121 LRDLDLKPSL PAIKQIIRNN PGRVQSSWEL FTQYKASMEN VPDELMEVVL EKIIKFDKAE 180
  181 KVDGKKSLTY QDLVRCLYLI NHFSSNYNLP SELVEPILIY IVDNGIPNVL GSVLKYKIPL 240
  241 SFFDKYVSEM TQYQICELYD FYSLDNIVAD PLVLHKCLTV LGENEKIQQT EEEKEIISKL 300
  301 EEEIDIVKSQ CHDNWSLEFP NWSVRKTATS FEELFLEIQK RNIDKKDFEL AHKLLRLIGA 360
  361 FKGKVSLFFK LYDEYLLKFK NNEDDLMFEA FLTLCCQGYK SSNEKMLQYA EAFIKEDFDS 420
  421 KLESKIQSVL IVANAKANID LSLKIYNSNI STAKREKDKY TDLAESDVLT ESLILAFLSR 480
  481 DDADFARVIF DGALGEKLIS GPTAAKKIKN LLAQYGEALE TKTSKQVMQT KIEHYMESI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen IMP4 YJR003C 2 Unpublished Fields Lab Data

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..53]
    [83..93]
    [205..447]    		 ORFEUS 8.3 (+)-bornyl diphosphate synthase
    2 View Details [54..82]
    [94..204]    		 ORFEUS 8.3 (+)-bornyl diphosphate synthase
    3 View Details [448..539] deduced N/A Confident ab initio structure predictions are available.
    4 View Details [451..539] deduced N/A Confident ab initio structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle