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Protein Overview: CBP1

General Information:
Name(s) found: CBP1 / YJL209W [SGD]
Description(s) found:
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  • pir||BVBYP1 CBP1 protein - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|6322252|ref|NP_012326.1| Mitochondrial protein that interacts with the 5'-untranslated region of the COB mRNA and has a role in its stability and translation; found in a complex at the inner membrane along with Pet309p; Cbp1p [Saccharomyces cerevisiae] [NCBI NR]
  • gi|496953|emb|CAA84002.1| ORF [Saccharomyces cerevisiae] [NCBI NR]
  • gi|171167|gb|AAA34474.1| CBP1 protein [NCBI NR]
  • gi|115860|sp|P07252.1|CBP1_YEAST RecName: Full=Cytochrome B pre-mRNA-processing protein 1 [NCBI NR]
  • gi|1015591|emb|CAA89506.1| CBP1 [Saccharomyces cerevisiae] [NCBI NR]
  • Cytochrome B pre-mRNA-processing protein 1 OS=Saccharomyces cerevisiae GN=CBP1 PE=1 SV=1 [Swiss-Prot]
  • CBP1 Apo-cytochrome b pre-mRNA processing protein [mips]
  • Mitochondrial protein that interacts with the 5'-untranslated region of the COB mRNA and has a role in its stability and translation; found in a complex at the inner membrane along with Pet309p [SGD]
  • CBP1, Chr X from 38005-39969 [yeast_orfs2]
  • Chr X from 38005-39969 [yeastorf3.fasta]
  • (P07252) Cytochrome B pre-mRNA processing protein 1 [4932.FASTACCERV.txt]
  • CBP1 SGDID:S0003745, Chr X from 38005-39969, Verified ORF [yeastflysequest.fasta]
  • Cbp1p [Saccharomyces cerevisiae]gi|1015591|emb|CAA89506.1| CBP1 [Saccharomyces cerevisiae]gi|496953|emb|CAA84002.1| ORF [Saccharomyces cerevisiae]gi|73084|pir||BVBYP1 CBP1 protein - yeast (Saccharomyces cerevisiae)gi|115860|sp|P07252|CBP1_YEAST CYTOCH [nrdb_11152004_Chlamydomonas]
  • CBP1 SGDID:S000003745, Chr X from 38005-39969, Verified ORF, "Mitochondrial protein that interacts with the 5'-untranslated region of the COB mRNA and has a role in its stability and translation; found in a complex at the inner membrane along with Pet309p [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • Cytochrome B pre-mRNA-processing protein 1 [nr-271106-contam.fasta]
  • ORF [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • CBP1 protein [nr-271106-contam.fasta]
  • CBP1 [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Mitochondrial protein that interacts with the 5'-untranslated region of the COB mRNA and has a role in its stability and translation; found in a complex at the inner membrane along with Pet309p; Cbp1p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • CBP1 SGDID:S000003745, Chr X from 38005-39969, Verified ORF, "Mitochondrial protein that interacts with the 5'-untranslated region of the COB mRNA and has a role in its stability and translation; found in a complex at the inner membrane along with Pet309p" [yeast-bovrabprots.fasta]
  • [chemostatdb.fasta]
  • Cytochrome B pre-mRNA-processing protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CBP1 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • CBP1 SGDID:S000003745, Chr X from 38005-39969, Genome Release 64-1-1, Verified ORF, "Mitochondrial protein that interacts with the 5'-untranslated region of the COB mRNA and has a role in its stability and translation; found in a complex at the inner membrane along with Pet309p" [yeast-030211-contam.fasta]
  • CBP1 SGDID:S000003745, Chr X from 38005-39969, Genome Release 64-2-1, Verified ORF, "Mitochondrial protein, regulator of COB mRNA stability and translation; interacts with the 5'-untranslated region of the COB mRNA; found in a complex at the inner membrane along with Pet309p; localizes to mitochondrial foci upon DNA replication stress" [20141208_orf_trans.fasta]
  • YJL209W SGDID:S000003745, Chr X from 38005-39969, Genome Release 64-1-1, Verified ORF, "Mitochondrial protein that interacts with the 5'-untranslated region of the COB mRNA and has a role in its stability and translation; found in a complex at the inner membrane along with Pet309p" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 654 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article]
    extrinsic to mitochondrial inner membrane [IDALink to PubMed article]
    Biological Process: mRNA catabolic process [IMPLink to PubMed article]
    aerobic respiration [IMPLink to PubMed article]
    Molecular Function: mRNA binding [IGILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLPRLVRYR TERFIKMVPT RTLRRINHSS RDPIQKQVLA LIKANANLND NDKLKIRKYW  60
   61 SDMADYKSLR KQENSLLESS ILHEVKIEDF ISFINRTKTS SMTTRGIYRR ECLYQCKKNL 120
  121 DLVNQVVSQV SSVRHQKPLT TQLDTMRWCV DDAIGTGDIV MAADLFLLYY RLFTDDKKLD 180
  181 EQYAKKIISV LAYPNPLHDH VHLVKYLQLN SLFESITGGG IKLTRFQLET LSNKALGLSN 240
  241 EAPQLCKAIL NKLMNINYSL TNDLKLRDDQ VLLAYKSIDE NYRRGNVASV YSIWNKIKEH 300
  301 YVSISAHDSR IIYKVFKICT HNRAYRSICS EMFWQLTPEY YCNNPLILPA IIDFITKQDS 360
  361 LTMAKELMQN INRYTLPENH HIVWLNKRCL SSLLRMHLKF NDSNGVDRVL KQITTNFRAL 420
  421 SQENYQAIII HLFKTQNLDH IAKAVKLLDT IPPGQAMLAY GSIINEVVDW KLASKVKFTD 480
  481 NLMALVNDLL TKAHDFDPDH RNSLWNVVSA LYIKKLCHYK KRDGKFVANA KKDIDLAKLL 540
  541 YINAAKRSKT YWTKSNCNPF IASSPCDVKL KVNNQNRFTI LRNIALSALQ IGRTDIFLWA 600
  601 CAELYQNGMT IEELKLDWNF ILKHQIRNSE FKTNKEIIQD IKKHGVSAVK RYLR

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details (MIPS) Mewes HW, et al. (2004) CBP1 CBP2 CBS1 CBS2

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run None Entered #17 Mitotic Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen RPN9 CBP1 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data CBP1 Huh WK, et al. (2003)
    View Data CBP1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..557] deduced N/A No confident structure predictions are available.
    2 View Details [558..654] MSA 1.002968 View MSA. Confident ab initio structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle